Identification of seven Crassostrea oysters from the South China Sea using PCR-RFLP analysis
We have developed a PCR–RFLP assay of two mitochondrial [16S rDNA and cytochrome oxidase I (COI)] and one nuclear (ITS-1) gene fragment for the identification of seven Crassostrea oysters from the South China Sea. These include the morphologically distinct Crassostrea sikamea and three pairs of morp...
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2009
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fthighwire:oai:open-archive.highwire.org:mollus:75/2/139 2023-05-15T15:58:38+02:00 Identification of seven Crassostrea oysters from the South China Sea using PCR-RFLP analysis Xia, Jianjun Yu, Ziniu Kong, Xiaoyu 2009-05-01 00:00:00.0 text/html http://mollus.oxfordjournals.org/cgi/content/short/75/2/139 https://doi.org/10.1093/mollus/eyp001 en eng Oxford University Press http://mollus.oxfordjournals.org/cgi/content/short/75/2/139 http://dx.doi.org/10.1093/mollus/eyp001 Copyright (C) 2009, The Malacological Society of London Research Papers TEXT 2009 fthighwire https://doi.org/10.1093/mollus/eyp001 2013-05-28T07:24:07Z We have developed a PCR–RFLP assay of two mitochondrial [16S rDNA and cytochrome oxidase I (COI)] and one nuclear (ITS-1) gene fragment for the identification of seven Crassostrea oysters from the South China Sea. These include the morphologically distinct Crassostrea sikamea and three pairs of morphologically similar species: Crassostrea hongkongensis and Crassostrea ariakensis , Crassostrea gigas and Crassostrea angulata , Crassostrea iredalei and an unidentified Crassostrea sp. All seven species can be distinguished with both mitochondrial markers: Dde I/ Dra I or Alu I/ Mse I digestion of 16S rDNA and Nis I/ Alu I or Nis I/ Dde I digestion of COI. Five of the seven species can be distinguished using a single endonuclease digestion of the ITS-1 fragment. Based on genetic distance estimates and on morphology, the newly discovered Crassostrea sp. appears most closely related to C. iredalei. Despite the existence of intra-specific variation at low frequency in some restriction sites, the PCR–RFLP assay developed here can be reliably applied to identify all seven oyster species. Text Crassostrea gigas HighWire Press (Stanford University) Journal of Molluscan Studies 75 2 139 146 |
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HighWire Press (Stanford University) |
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English |
topic |
Research Papers |
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Research Papers Xia, Jianjun Yu, Ziniu Kong, Xiaoyu Identification of seven Crassostrea oysters from the South China Sea using PCR-RFLP analysis |
topic_facet |
Research Papers |
description |
We have developed a PCR–RFLP assay of two mitochondrial [16S rDNA and cytochrome oxidase I (COI)] and one nuclear (ITS-1) gene fragment for the identification of seven Crassostrea oysters from the South China Sea. These include the morphologically distinct Crassostrea sikamea and three pairs of morphologically similar species: Crassostrea hongkongensis and Crassostrea ariakensis , Crassostrea gigas and Crassostrea angulata , Crassostrea iredalei and an unidentified Crassostrea sp. All seven species can be distinguished with both mitochondrial markers: Dde I/ Dra I or Alu I/ Mse I digestion of 16S rDNA and Nis I/ Alu I or Nis I/ Dde I digestion of COI. Five of the seven species can be distinguished using a single endonuclease digestion of the ITS-1 fragment. Based on genetic distance estimates and on morphology, the newly discovered Crassostrea sp. appears most closely related to C. iredalei. Despite the existence of intra-specific variation at low frequency in some restriction sites, the PCR–RFLP assay developed here can be reliably applied to identify all seven oyster species. |
format |
Text |
author |
Xia, Jianjun Yu, Ziniu Kong, Xiaoyu |
author_facet |
Xia, Jianjun Yu, Ziniu Kong, Xiaoyu |
author_sort |
Xia, Jianjun |
title |
Identification of seven Crassostrea oysters from the South China Sea using PCR-RFLP analysis |
title_short |
Identification of seven Crassostrea oysters from the South China Sea using PCR-RFLP analysis |
title_full |
Identification of seven Crassostrea oysters from the South China Sea using PCR-RFLP analysis |
title_fullStr |
Identification of seven Crassostrea oysters from the South China Sea using PCR-RFLP analysis |
title_full_unstemmed |
Identification of seven Crassostrea oysters from the South China Sea using PCR-RFLP analysis |
title_sort |
identification of seven crassostrea oysters from the south china sea using pcr-rflp analysis |
publisher |
Oxford University Press |
publishDate |
2009 |
url |
http://mollus.oxfordjournals.org/cgi/content/short/75/2/139 https://doi.org/10.1093/mollus/eyp001 |
genre |
Crassostrea gigas |
genre_facet |
Crassostrea gigas |
op_relation |
http://mollus.oxfordjournals.org/cgi/content/short/75/2/139 http://dx.doi.org/10.1093/mollus/eyp001 |
op_rights |
Copyright (C) 2009, The Malacological Society of London |
op_doi |
https://doi.org/10.1093/mollus/eyp001 |
container_title |
Journal of Molluscan Studies |
container_volume |
75 |
container_issue |
2 |
container_start_page |
139 |
op_container_end_page |
146 |
_version_ |
1766394405947703296 |