Adaptive Evolution of Gene Expression in Antarctic Fishes: Divergent Transcription of the 5'-to-5' Linked Adult {alpha}1- and {beta}-Globin Genes of the Antarctic Teleost Notothenia coriiceps is Controlled by Dual Promoters and Intergenic Enhancers

Unlike temperate fishes, Antarctic fishes of the notothenioid suborder, whose body temperatures (−2 to +1°C) conform to the Southern Ocean, must express their genomes in an extremely cold thermal regime. To determine whether these fishes have evolved compensatory adjustments that maintain efficient...

Full description

Bibliographic Details
Published in:American Zoologist
Main Authors: Lau, David T., Saeed-Kothe, Amna, Parker, Sandra K., William Detrich, H.
Format: Text
Language:English
Published: Oxford University Press 2001
Subjects:
Online Access:http://icb.oxfordjournals.org/cgi/content/short/41/1/113
https://doi.org/10.1093/icb/41.1.113
id fthighwire:oai:open-archive.highwire.org:icbiol:41/1/113
record_format openpolar
spelling fthighwire:oai:open-archive.highwire.org:icbiol:41/1/113 2023-05-15T14:03:07+02:00 Adaptive Evolution of Gene Expression in Antarctic Fishes: Divergent Transcription of the 5'-to-5' Linked Adult {alpha}1- and {beta}-Globin Genes of the Antarctic Teleost Notothenia coriiceps is Controlled by Dual Promoters and Intergenic Enhancers Lau, David T. Saeed-Kothe, Amna Parker, Sandra K. William Detrich, H. 2001-02-01 00:00:00.0 text/html http://icb.oxfordjournals.org/cgi/content/short/41/1/113 https://doi.org/10.1093/icb/41.1.113 en eng Oxford University Press http://icb.oxfordjournals.org/cgi/content/short/41/1/113 http://dx.doi.org/10.1093/icb/41.1.113 Copyright (C) 2001, The Society for Integrative and Comparative Biology Regular Article TEXT 2001 fthighwire https://doi.org/10.1093/icb/41.1.113 2007-06-24T22:08:17Z Unlike temperate fishes, Antarctic fishes of the notothenioid suborder, whose body temperatures (−2 to +1°C) conform to the Southern Ocean, must express their genomes in an extremely cold thermal regime. To determine whether these fishes have evolved compensatory adjustments that maintain efficient gene transcription at low temperatures, we have initiated studies of the cis -acting regulatory elements that control globin gene expression in the Antarctic rockcod Notothenia coriiceps and in its close relative, the temperate New Zealand black cod N. angustata (habitat temperature = +6 to +15°C). The genes encoding the major α1 and β globins of these fishes are tightly linked in head-to-head (5′ to 5′) orientation. The intergenic regions separating the globin genes in the two fishes, ∼4.3 kb in N. coriiceps and ∼3.2 kb in N. angustata , are highly similar in sequence, the major difference being the absence of a 1.1-kb, repeat-containing segment in the latter. To assess the promoter and enhancer activities of the intergenic regions, each was cloned into the luciferase-reporter vector pGL3-Basic, and the constructs were transfected into MEL cells. Upon DMSO induction of MEL cell differentiation, each of the α/β-intergenic regions functioned in both orientations as erythroid-responsive transcriptional regulators. However, expression of luciferase mediated by the N. coriiceps intergene was 6-fold greater in the α orientation than that for the N. angustata intergene and 2-fold greater for the β. The greater transcription-stimulating activity of the N. coriiceps intergene can be attributed to two enhancers composed of combinations of CAC/Sp1 and GATA motifs and located in direct repeat elements. N. angustata , which lacked repetitive structure in its intergene, contained a single copy of the enhancer. We propose that cold adaptation of globin gene expression in N. coriiceps evolved in part through duplication and refinement of critical cis -acting regulatory elements as the Southern Ocean cooled during the past 25 million ... Text Antarc* Antarctic Southern Ocean HighWire Press (Stanford University) Antarctic Gata ENVELOPE(-19.702,-19.702,63.540,63.540) New Zealand Southern Ocean The Antarctic American Zoologist 41 1 113 132
institution Open Polar
collection HighWire Press (Stanford University)
op_collection_id fthighwire
language English
topic Regular Article
spellingShingle Regular Article
Lau, David T.
Saeed-Kothe, Amna
Parker, Sandra K.
William Detrich, H.
Adaptive Evolution of Gene Expression in Antarctic Fishes: Divergent Transcription of the 5'-to-5' Linked Adult {alpha}1- and {beta}-Globin Genes of the Antarctic Teleost Notothenia coriiceps is Controlled by Dual Promoters and Intergenic Enhancers
topic_facet Regular Article
description Unlike temperate fishes, Antarctic fishes of the notothenioid suborder, whose body temperatures (−2 to +1°C) conform to the Southern Ocean, must express their genomes in an extremely cold thermal regime. To determine whether these fishes have evolved compensatory adjustments that maintain efficient gene transcription at low temperatures, we have initiated studies of the cis -acting regulatory elements that control globin gene expression in the Antarctic rockcod Notothenia coriiceps and in its close relative, the temperate New Zealand black cod N. angustata (habitat temperature = +6 to +15°C). The genes encoding the major α1 and β globins of these fishes are tightly linked in head-to-head (5′ to 5′) orientation. The intergenic regions separating the globin genes in the two fishes, ∼4.3 kb in N. coriiceps and ∼3.2 kb in N. angustata , are highly similar in sequence, the major difference being the absence of a 1.1-kb, repeat-containing segment in the latter. To assess the promoter and enhancer activities of the intergenic regions, each was cloned into the luciferase-reporter vector pGL3-Basic, and the constructs were transfected into MEL cells. Upon DMSO induction of MEL cell differentiation, each of the α/β-intergenic regions functioned in both orientations as erythroid-responsive transcriptional regulators. However, expression of luciferase mediated by the N. coriiceps intergene was 6-fold greater in the α orientation than that for the N. angustata intergene and 2-fold greater for the β. The greater transcription-stimulating activity of the N. coriiceps intergene can be attributed to two enhancers composed of combinations of CAC/Sp1 and GATA motifs and located in direct repeat elements. N. angustata , which lacked repetitive structure in its intergene, contained a single copy of the enhancer. We propose that cold adaptation of globin gene expression in N. coriiceps evolved in part through duplication and refinement of critical cis -acting regulatory elements as the Southern Ocean cooled during the past 25 million ...
format Text
author Lau, David T.
Saeed-Kothe, Amna
Parker, Sandra K.
William Detrich, H.
author_facet Lau, David T.
Saeed-Kothe, Amna
Parker, Sandra K.
William Detrich, H.
author_sort Lau, David T.
title Adaptive Evolution of Gene Expression in Antarctic Fishes: Divergent Transcription of the 5'-to-5' Linked Adult {alpha}1- and {beta}-Globin Genes of the Antarctic Teleost Notothenia coriiceps is Controlled by Dual Promoters and Intergenic Enhancers
title_short Adaptive Evolution of Gene Expression in Antarctic Fishes: Divergent Transcription of the 5'-to-5' Linked Adult {alpha}1- and {beta}-Globin Genes of the Antarctic Teleost Notothenia coriiceps is Controlled by Dual Promoters and Intergenic Enhancers
title_full Adaptive Evolution of Gene Expression in Antarctic Fishes: Divergent Transcription of the 5'-to-5' Linked Adult {alpha}1- and {beta}-Globin Genes of the Antarctic Teleost Notothenia coriiceps is Controlled by Dual Promoters and Intergenic Enhancers
title_fullStr Adaptive Evolution of Gene Expression in Antarctic Fishes: Divergent Transcription of the 5'-to-5' Linked Adult {alpha}1- and {beta}-Globin Genes of the Antarctic Teleost Notothenia coriiceps is Controlled by Dual Promoters and Intergenic Enhancers
title_full_unstemmed Adaptive Evolution of Gene Expression in Antarctic Fishes: Divergent Transcription of the 5'-to-5' Linked Adult {alpha}1- and {beta}-Globin Genes of the Antarctic Teleost Notothenia coriiceps is Controlled by Dual Promoters and Intergenic Enhancers
title_sort adaptive evolution of gene expression in antarctic fishes: divergent transcription of the 5'-to-5' linked adult {alpha}1- and {beta}-globin genes of the antarctic teleost notothenia coriiceps is controlled by dual promoters and intergenic enhancers
publisher Oxford University Press
publishDate 2001
url http://icb.oxfordjournals.org/cgi/content/short/41/1/113
https://doi.org/10.1093/icb/41.1.113
long_lat ENVELOPE(-19.702,-19.702,63.540,63.540)
geographic Antarctic
Gata
New Zealand
Southern Ocean
The Antarctic
geographic_facet Antarctic
Gata
New Zealand
Southern Ocean
The Antarctic
genre Antarc*
Antarctic
Southern Ocean
genre_facet Antarc*
Antarctic
Southern Ocean
op_relation http://icb.oxfordjournals.org/cgi/content/short/41/1/113
http://dx.doi.org/10.1093/icb/41.1.113
op_rights Copyright (C) 2001, The Society for Integrative and Comparative Biology
op_doi https://doi.org/10.1093/icb/41.1.113
container_title American Zoologist
container_volume 41
container_issue 1
container_start_page 113
op_container_end_page 132
_version_ 1766273646170472448