Table_1_Multiple Selection Signatures in Farmed Atlantic Salmon Adapted to Different Environments Across Hemispheres.xlsx
Domestication of Atlantic salmon started approximately 40 years ago, using artificial selection through genetic improvement programs. Selection is likely to have imposed distinctive signatures on the salmon genome, which are often characterized by high genetic differentiation across population and/o...
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ftfrontimediafig:oai:figshare.com:article/9934151 2023-05-15T15:28:48+02:00 Table_1_Multiple Selection Signatures in Farmed Atlantic Salmon Adapted to Different Environments Across Hemispheres.xlsx María Eugenia López Tyler Linderoth Ashie Norris Jean Paul Lhorente Roberto Neira José Manuel Yáñez 2019-10-03T14:33:39Z https://doi.org/10.3389/fgene.2019.00901.s002 https://figshare.com/articles/Table_1_Multiple_Selection_Signatures_in_Farmed_Atlantic_Salmon_Adapted_to_Different_Environments_Across_Hemispheres_xlsx/9934151 unknown doi:10.3389/fgene.2019.00901.s002 https://figshare.com/articles/Table_1_Multiple_Selection_Signatures_in_Farmed_Atlantic_Salmon_Adapted_to_Different_Environments_Across_Hemispheres_xlsx/9934151 CC BY 4.0 CC-BY Genetics Genetic Engineering Biomarkers Developmental Genetics (incl. Sex Determination) Epigenetics (incl. Genome Methylation and Epigenomics) Gene Expression (incl. Microarray and other genome-wide approaches) Genome Structure and Regulation Genomics Genetically Modified Animals Livestock Cloning Gene and Molecular Therapy selection signatures Salmo salar Domestication SNP data artificial selection Dataset 2019 ftfrontimediafig https://doi.org/10.3389/fgene.2019.00901.s002 2019-10-09T22:54:22Z Domestication of Atlantic salmon started approximately 40 years ago, using artificial selection through genetic improvement programs. Selection is likely to have imposed distinctive signatures on the salmon genome, which are often characterized by high genetic differentiation across population and/or reduction in genetic diversity in regions associated to traits under selection. The identification of such selection signatures may give insights into the candidate genomic regions of biological and commercial interest. Here, we used three complementary statistics to detect selection signatures, two haplotype-based (iHS and XP-EHH), and one F ST -based method (BayeScan) among four populations of Atlantic salmon with a common genetic origin. Several regions were identified for these techniques that harbored genes, such as kind1 and chp2, which have been associated with growth-related traits or the kcnb2 gene related to immune system in Atlantic salmon, making them particularly relevant in the context of aquaculture. Our results provide candidate genes to inform the evolutionary and biological mechanisms controlling complex selected traits in Atlantic salmon. Dataset Atlantic salmon Salmo salar Frontiers: Figshare |
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Frontiers: Figshare |
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ftfrontimediafig |
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unknown |
topic |
Genetics Genetic Engineering Biomarkers Developmental Genetics (incl. Sex Determination) Epigenetics (incl. Genome Methylation and Epigenomics) Gene Expression (incl. Microarray and other genome-wide approaches) Genome Structure and Regulation Genomics Genetically Modified Animals Livestock Cloning Gene and Molecular Therapy selection signatures Salmo salar Domestication SNP data artificial selection |
spellingShingle |
Genetics Genetic Engineering Biomarkers Developmental Genetics (incl. Sex Determination) Epigenetics (incl. Genome Methylation and Epigenomics) Gene Expression (incl. Microarray and other genome-wide approaches) Genome Structure and Regulation Genomics Genetically Modified Animals Livestock Cloning Gene and Molecular Therapy selection signatures Salmo salar Domestication SNP data artificial selection María Eugenia López Tyler Linderoth Ashie Norris Jean Paul Lhorente Roberto Neira José Manuel Yáñez Table_1_Multiple Selection Signatures in Farmed Atlantic Salmon Adapted to Different Environments Across Hemispheres.xlsx |
topic_facet |
Genetics Genetic Engineering Biomarkers Developmental Genetics (incl. Sex Determination) Epigenetics (incl. Genome Methylation and Epigenomics) Gene Expression (incl. Microarray and other genome-wide approaches) Genome Structure and Regulation Genomics Genetically Modified Animals Livestock Cloning Gene and Molecular Therapy selection signatures Salmo salar Domestication SNP data artificial selection |
description |
Domestication of Atlantic salmon started approximately 40 years ago, using artificial selection through genetic improvement programs. Selection is likely to have imposed distinctive signatures on the salmon genome, which are often characterized by high genetic differentiation across population and/or reduction in genetic diversity in regions associated to traits under selection. The identification of such selection signatures may give insights into the candidate genomic regions of biological and commercial interest. Here, we used three complementary statistics to detect selection signatures, two haplotype-based (iHS and XP-EHH), and one F ST -based method (BayeScan) among four populations of Atlantic salmon with a common genetic origin. Several regions were identified for these techniques that harbored genes, such as kind1 and chp2, which have been associated with growth-related traits or the kcnb2 gene related to immune system in Atlantic salmon, making them particularly relevant in the context of aquaculture. Our results provide candidate genes to inform the evolutionary and biological mechanisms controlling complex selected traits in Atlantic salmon. |
format |
Dataset |
author |
María Eugenia López Tyler Linderoth Ashie Norris Jean Paul Lhorente Roberto Neira José Manuel Yáñez |
author_facet |
María Eugenia López Tyler Linderoth Ashie Norris Jean Paul Lhorente Roberto Neira José Manuel Yáñez |
author_sort |
María Eugenia López |
title |
Table_1_Multiple Selection Signatures in Farmed Atlantic Salmon Adapted to Different Environments Across Hemispheres.xlsx |
title_short |
Table_1_Multiple Selection Signatures in Farmed Atlantic Salmon Adapted to Different Environments Across Hemispheres.xlsx |
title_full |
Table_1_Multiple Selection Signatures in Farmed Atlantic Salmon Adapted to Different Environments Across Hemispheres.xlsx |
title_fullStr |
Table_1_Multiple Selection Signatures in Farmed Atlantic Salmon Adapted to Different Environments Across Hemispheres.xlsx |
title_full_unstemmed |
Table_1_Multiple Selection Signatures in Farmed Atlantic Salmon Adapted to Different Environments Across Hemispheres.xlsx |
title_sort |
table_1_multiple selection signatures in farmed atlantic salmon adapted to different environments across hemispheres.xlsx |
publishDate |
2019 |
url |
https://doi.org/10.3389/fgene.2019.00901.s002 https://figshare.com/articles/Table_1_Multiple_Selection_Signatures_in_Farmed_Atlantic_Salmon_Adapted_to_Different_Environments_Across_Hemispheres_xlsx/9934151 |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_relation |
doi:10.3389/fgene.2019.00901.s002 https://figshare.com/articles/Table_1_Multiple_Selection_Signatures_in_Farmed_Atlantic_Salmon_Adapted_to_Different_Environments_Across_Hemispheres_xlsx/9934151 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.3389/fgene.2019.00901.s002 |
_version_ |
1766359151451045888 |