Table_1_New Insight Into Avian Papillomavirus Ecology and Evolution From Characterization of Novel Wild Bird Papillomaviruses.XLSX
Viruses in the family Papillomaviridae have circular dsDNA genomes of approximately 5.7–8.6 kb that are packaged within non-enveloped, icosahedral capsids. The known papillomavirus (PV) representatives infect vertebrates, and there are currently more than 130 recognized PV species in more than 50 ge...
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ftfrontimediafig:oai:figshare.com:article/7987127 2023-05-15T15:27:57+02:00 Table_1_New Insight Into Avian Papillomavirus Ecology and Evolution From Characterization of Novel Wild Bird Papillomaviruses.XLSX Marta Canuti Hannah J. Munro Gregory J. Robertson Ashley N. K. Kroyer Sheena Roul Davor Ojkic Hugh G. Whitney Andrew S. Lang 2019-04-12T08:14:30Z https://doi.org/10.3389/fmicb.2019.00701.s002 https://figshare.com/articles/Table_1_New_Insight_Into_Avian_Papillomavirus_Ecology_and_Evolution_From_Characterization_of_Novel_Wild_Bird_Papillomaviruses_XLSX/7987127 unknown doi:10.3389/fmicb.2019.00701.s002 https://figshare.com/articles/Table_1_New_Insight_Into_Avian_Papillomavirus_Ecology_and_Evolution_From_Characterization_of_Novel_Wild_Bird_Papillomaviruses_XLSX/7987127 CC BY 4.0 CC-BY Microbiology Microbial Genetics Microbial Ecology Mycology papillomavirus avian papillomavirus virus discovery virus evolution viral ecology molecular epidemiology Dataset 2019 ftfrontimediafig https://doi.org/10.3389/fmicb.2019.00701.s002 2019-04-17T22:59:30Z Viruses in the family Papillomaviridae have circular dsDNA genomes of approximately 5.7–8.6 kb that are packaged within non-enveloped, icosahedral capsids. The known papillomavirus (PV) representatives infect vertebrates, and there are currently more than 130 recognized PV species in more than 50 genera. We identified 12 novel avian papillomavirus (APV) types in wild birds that could represent five distinct species and two genera. Viruses were detected in paired oropharyngeal/cloacal swabs collected from six bird species, increasing the number of avian species known to harbor PVs by 40%. A new duck PV (DuPV-3) was found in mallard and American black duck (27.6% estimated prevalence) that was monophyletic with other known DuPVs. A single viral type was identified in Atlantic puffin (PuPV-1, 9.8% estimated prevalence), while a higher genetic diversity was found in other Charadriiformes. Specifically, three types [gull PV-1 (GuPV-1), -2, and -3] were identified in two gull species (estimated prevalence of 17% and 2.6% in American herring and great black-backed gull, respectively), and seven types [kittiwake PV-1 (KiPV-1) through -7] were found in black-legged kittiwake (81.3% estimated prevalence). Significantly higher DuPV-3 circulation was observed in spring compared to fall and in adults compared to juveniles. The studied host species’ tendencies to be in crowded environments likely affect infection rates and their migratory behaviors could explain the high viral diversity, illustrating how host behavior can influence viral ecology and distribution. For DuPV-3, GuPV-1, PuPV-1, and KiPV-2, we obtained the complete genomic sequences, which showed the same organization as other known APVs. Phylogenetic analyses showed evidence for virus–host co-divergence at the host taxonomic levels of family, order, and inter-order, but we also observed that host-specificity constraints are relaxed among highly related hosts as we found cross-species transmission within ducks and within gulls. Furthermore, the phylogeny of ... Dataset Atlantic puffin Black-legged Kittiwake Frontiers: Figshare |
institution |
Open Polar |
collection |
Frontiers: Figshare |
op_collection_id |
ftfrontimediafig |
language |
unknown |
topic |
Microbiology Microbial Genetics Microbial Ecology Mycology papillomavirus avian papillomavirus virus discovery virus evolution viral ecology molecular epidemiology |
spellingShingle |
Microbiology Microbial Genetics Microbial Ecology Mycology papillomavirus avian papillomavirus virus discovery virus evolution viral ecology molecular epidemiology Marta Canuti Hannah J. Munro Gregory J. Robertson Ashley N. K. Kroyer Sheena Roul Davor Ojkic Hugh G. Whitney Andrew S. Lang Table_1_New Insight Into Avian Papillomavirus Ecology and Evolution From Characterization of Novel Wild Bird Papillomaviruses.XLSX |
topic_facet |
Microbiology Microbial Genetics Microbial Ecology Mycology papillomavirus avian papillomavirus virus discovery virus evolution viral ecology molecular epidemiology |
description |
Viruses in the family Papillomaviridae have circular dsDNA genomes of approximately 5.7–8.6 kb that are packaged within non-enveloped, icosahedral capsids. The known papillomavirus (PV) representatives infect vertebrates, and there are currently more than 130 recognized PV species in more than 50 genera. We identified 12 novel avian papillomavirus (APV) types in wild birds that could represent five distinct species and two genera. Viruses were detected in paired oropharyngeal/cloacal swabs collected from six bird species, increasing the number of avian species known to harbor PVs by 40%. A new duck PV (DuPV-3) was found in mallard and American black duck (27.6% estimated prevalence) that was monophyletic with other known DuPVs. A single viral type was identified in Atlantic puffin (PuPV-1, 9.8% estimated prevalence), while a higher genetic diversity was found in other Charadriiformes. Specifically, three types [gull PV-1 (GuPV-1), -2, and -3] were identified in two gull species (estimated prevalence of 17% and 2.6% in American herring and great black-backed gull, respectively), and seven types [kittiwake PV-1 (KiPV-1) through -7] were found in black-legged kittiwake (81.3% estimated prevalence). Significantly higher DuPV-3 circulation was observed in spring compared to fall and in adults compared to juveniles. The studied host species’ tendencies to be in crowded environments likely affect infection rates and their migratory behaviors could explain the high viral diversity, illustrating how host behavior can influence viral ecology and distribution. For DuPV-3, GuPV-1, PuPV-1, and KiPV-2, we obtained the complete genomic sequences, which showed the same organization as other known APVs. Phylogenetic analyses showed evidence for virus–host co-divergence at the host taxonomic levels of family, order, and inter-order, but we also observed that host-specificity constraints are relaxed among highly related hosts as we found cross-species transmission within ducks and within gulls. Furthermore, the phylogeny of ... |
format |
Dataset |
author |
Marta Canuti Hannah J. Munro Gregory J. Robertson Ashley N. K. Kroyer Sheena Roul Davor Ojkic Hugh G. Whitney Andrew S. Lang |
author_facet |
Marta Canuti Hannah J. Munro Gregory J. Robertson Ashley N. K. Kroyer Sheena Roul Davor Ojkic Hugh G. Whitney Andrew S. Lang |
author_sort |
Marta Canuti |
title |
Table_1_New Insight Into Avian Papillomavirus Ecology and Evolution From Characterization of Novel Wild Bird Papillomaviruses.XLSX |
title_short |
Table_1_New Insight Into Avian Papillomavirus Ecology and Evolution From Characterization of Novel Wild Bird Papillomaviruses.XLSX |
title_full |
Table_1_New Insight Into Avian Papillomavirus Ecology and Evolution From Characterization of Novel Wild Bird Papillomaviruses.XLSX |
title_fullStr |
Table_1_New Insight Into Avian Papillomavirus Ecology and Evolution From Characterization of Novel Wild Bird Papillomaviruses.XLSX |
title_full_unstemmed |
Table_1_New Insight Into Avian Papillomavirus Ecology and Evolution From Characterization of Novel Wild Bird Papillomaviruses.XLSX |
title_sort |
table_1_new insight into avian papillomavirus ecology and evolution from characterization of novel wild bird papillomaviruses.xlsx |
publishDate |
2019 |
url |
https://doi.org/10.3389/fmicb.2019.00701.s002 https://figshare.com/articles/Table_1_New_Insight_Into_Avian_Papillomavirus_Ecology_and_Evolution_From_Characterization_of_Novel_Wild_Bird_Papillomaviruses_XLSX/7987127 |
genre |
Atlantic puffin Black-legged Kittiwake |
genre_facet |
Atlantic puffin Black-legged Kittiwake |
op_relation |
doi:10.3389/fmicb.2019.00701.s002 https://figshare.com/articles/Table_1_New_Insight_Into_Avian_Papillomavirus_Ecology_and_Evolution_From_Characterization_of_Novel_Wild_Bird_Papillomaviruses_XLSX/7987127 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.3389/fmicb.2019.00701.s002 |
_version_ |
1766358348686426112 |