Table_3_A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO2 in the Model Diatom Phaeodactylum tricornutum.XLSX
Understanding of the molecular responses underpinning diatom responses to ocean acidification is fundamental for predicting how important primary producers will be shaped by the continuous rise in atmospheric CO 2 . In this study, we have analyzed global transcriptomic changes of the model diatom Ph...
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ftfrontimediafig:oai:figshare.com:article/7692779 2023-05-15T17:49:59+02:00 Table_3_A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO2 in the Model Diatom Phaeodactylum tricornutum.XLSX Ruiping Huang Jiancheng Ding Kunshan Gao Maria Helena Cruz de Carvalho Leila Tirichine Chris Bowler Xin Lin 2019-02-08T04:30:03Z https://doi.org/10.3389/fmicb.2018.03342.s005 https://figshare.com/articles/Table_3_A_Potential_Role_for_Epigenetic_Processes_in_the_Acclimation_Response_to_Elevated_pCO2_in_the_Model_Diatom_Phaeodactylum_tricornutum_XLSX/7692779 unknown doi:10.3389/fmicb.2018.03342.s005 https://figshare.com/articles/Table_3_A_Potential_Role_for_Epigenetic_Processes_in_the_Acclimation_Response_to_Elevated_pCO2_in_the_Model_Diatom_Phaeodactylum_tricornutum_XLSX/7692779 CC BY 4.0 CC-BY Microbiology Microbial Genetics Microbial Ecology Mycology ocean acidification climate change diatom transposable element histone long non-coding RNA Dataset 2019 ftfrontimediafig https://doi.org/10.3389/fmicb.2018.03342.s005 2019-02-13T23:59:08Z Understanding of the molecular responses underpinning diatom responses to ocean acidification is fundamental for predicting how important primary producers will be shaped by the continuous rise in atmospheric CO 2 . In this study, we have analyzed global transcriptomic changes of the model diatom Phaeodactylum tricornutum following growth for 15 generations in elevated pCO 2 by strand-specific RNA sequencing (ssRNA-seq). Our results indicate that no significant effects of elevated pCO 2 and associated carbonate chemistry changes on the physiological performance of the cells were observed after 15 generations whereas the expression of genes encoding histones and other genes involved in chromatin structure were significantly down-regulated, while the expression of transposable elements (TEs) and genes encoding histone acetylation enzymes were significantly up-regulated. Furthermore, we identified a series of long non-protein coding RNAs (lncRNAs) specifically responsive to elevated pCO 2 , suggesting putative regulatory roles for these largely uncharacterized genome components. Taken together, our integrative analyses reveal that epigenetic elements such as TEs, histone modifications and lncRNAs may have important roles in the acclimation of diatoms to elevated pCO 2 over short time scales and thus may influence longer term adaptive processes in response to progressive ocean acidification. Dataset Ocean acidification Frontiers: Figshare |
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Frontiers: Figshare |
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ftfrontimediafig |
language |
unknown |
topic |
Microbiology Microbial Genetics Microbial Ecology Mycology ocean acidification climate change diatom transposable element histone long non-coding RNA |
spellingShingle |
Microbiology Microbial Genetics Microbial Ecology Mycology ocean acidification climate change diatom transposable element histone long non-coding RNA Ruiping Huang Jiancheng Ding Kunshan Gao Maria Helena Cruz de Carvalho Leila Tirichine Chris Bowler Xin Lin Table_3_A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO2 in the Model Diatom Phaeodactylum tricornutum.XLSX |
topic_facet |
Microbiology Microbial Genetics Microbial Ecology Mycology ocean acidification climate change diatom transposable element histone long non-coding RNA |
description |
Understanding of the molecular responses underpinning diatom responses to ocean acidification is fundamental for predicting how important primary producers will be shaped by the continuous rise in atmospheric CO 2 . In this study, we have analyzed global transcriptomic changes of the model diatom Phaeodactylum tricornutum following growth for 15 generations in elevated pCO 2 by strand-specific RNA sequencing (ssRNA-seq). Our results indicate that no significant effects of elevated pCO 2 and associated carbonate chemistry changes on the physiological performance of the cells were observed after 15 generations whereas the expression of genes encoding histones and other genes involved in chromatin structure were significantly down-regulated, while the expression of transposable elements (TEs) and genes encoding histone acetylation enzymes were significantly up-regulated. Furthermore, we identified a series of long non-protein coding RNAs (lncRNAs) specifically responsive to elevated pCO 2 , suggesting putative regulatory roles for these largely uncharacterized genome components. Taken together, our integrative analyses reveal that epigenetic elements such as TEs, histone modifications and lncRNAs may have important roles in the acclimation of diatoms to elevated pCO 2 over short time scales and thus may influence longer term adaptive processes in response to progressive ocean acidification. |
format |
Dataset |
author |
Ruiping Huang Jiancheng Ding Kunshan Gao Maria Helena Cruz de Carvalho Leila Tirichine Chris Bowler Xin Lin |
author_facet |
Ruiping Huang Jiancheng Ding Kunshan Gao Maria Helena Cruz de Carvalho Leila Tirichine Chris Bowler Xin Lin |
author_sort |
Ruiping Huang |
title |
Table_3_A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO2 in the Model Diatom Phaeodactylum tricornutum.XLSX |
title_short |
Table_3_A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO2 in the Model Diatom Phaeodactylum tricornutum.XLSX |
title_full |
Table_3_A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO2 in the Model Diatom Phaeodactylum tricornutum.XLSX |
title_fullStr |
Table_3_A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO2 in the Model Diatom Phaeodactylum tricornutum.XLSX |
title_full_unstemmed |
Table_3_A Potential Role for Epigenetic Processes in the Acclimation Response to Elevated pCO2 in the Model Diatom Phaeodactylum tricornutum.XLSX |
title_sort |
table_3_a potential role for epigenetic processes in the acclimation response to elevated pco2 in the model diatom phaeodactylum tricornutum.xlsx |
publishDate |
2019 |
url |
https://doi.org/10.3389/fmicb.2018.03342.s005 https://figshare.com/articles/Table_3_A_Potential_Role_for_Epigenetic_Processes_in_the_Acclimation_Response_to_Elevated_pCO2_in_the_Model_Diatom_Phaeodactylum_tricornutum_XLSX/7692779 |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
doi:10.3389/fmicb.2018.03342.s005 https://figshare.com/articles/Table_3_A_Potential_Role_for_Epigenetic_Processes_in_the_Acclimation_Response_to_Elevated_pCO2_in_the_Model_Diatom_Phaeodactylum_tricornutum_XLSX/7692779 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.3389/fmicb.2018.03342.s005 |
_version_ |
1766156551807041536 |