Table_2_Diversity of Mesopelagic Fishes in the Southern Ocean - A Phylogeographic Perspective Using DNA Barcoding.DOCX
Small mesopelagic fish are ubiquitous in the ocean, representing an important trophic link between zooplankton and tertiary consumers such as larger fish, marine mammals and birds. Lanternfishes (Myctophidae) are common worldwide as well as in the Southern Ocean. However, only 17 of the approximatel...
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ftfrontimediafig:oai:figshare.com:article/7046249 2023-05-15T13:56:49+02:00 Table_2_Diversity of Mesopelagic Fishes in the Southern Ocean - A Phylogeographic Perspective Using DNA Barcoding.DOCX Henrik Christiansen Agnès Dettai Franz M. Heindler Martin A. Collins Guy Duhamel Mélyne Hautecoeur Dirk Steinke Filip A. M. Volckaert Anton P. Van de Putte 2018-09-05T04:05:20Z https://doi.org/10.3389/fevo.2018.00120.s003 https://figshare.com/articles/Table_2_Diversity_of_Mesopelagic_Fishes_in_the_Southern_Ocean_-_A_Phylogeographic_Perspective_Using_DNA_Barcoding_DOCX/7046249 unknown doi:10.3389/fevo.2018.00120.s003 https://figshare.com/articles/Table_2_Diversity_of_Mesopelagic_Fishes_in_the_Southern_Ocean_-_A_Phylogeographic_Perspective_Using_DNA_Barcoding_DOCX/7046249 CC BY 4.0 CC-BY Evolutionary Biology Ecology Invasive Species Ecology Landscape Ecology Conservation and Biodiversity Behavioural Ecology Community Ecology (excl. Invasive Species Ecology) Ecological Physiology Freshwater Ecology Marine and Estuarine Ecology (incl. Marine Ichthyology) Population Ecology Terrestrial Ecology marine biodiversity adaptation Antarctic COI Myctophidae phylogeny rhodopsin Dataset 2018 ftfrontimediafig https://doi.org/10.3389/fevo.2018.00120.s003 2018-09-05T22:56:54Z Small mesopelagic fish are ubiquitous in the ocean, representing an important trophic link between zooplankton and tertiary consumers such as larger fish, marine mammals and birds. Lanternfishes (Myctophidae) are common worldwide as well as in the Southern Ocean. However, only 17 of the approximately 250 myctophid species occur exclusively in sub-Antarctic or Antarctic waters. It is unclear whether they colonized these latitudes once and diversified from there, or whether multiple colonization events took place in which multiple ancestral phenotypes entered the Southern Ocean at various times. Phylogeographic patterns have been investigated for individual myctophid species, but so far no study has compared species across the Southern Ocean. Here, we present a dataset with previously unpublished cytochrome c oxidase I (COI; n = 299) and rhodopsin (rh1; n = 87) gene sequences from specimens collected at various locations in the Southern Ocean. Our data extend the DNA barcode library of Antarctic mesopelagic fish substantially. Combined morphological and molecular taxonomy lead to confident species level identification in 271 out of 299 cases, providing a robust reference dataset for specimen identification, independently of incomplete morphological characters. This is highly topical in light of prospective ecological metabarcoding studies. Unambiguous sequences were subsequently combined with publicly available sequences of the global DNA barcode library yielding a dataset of over 1,000 individuals for phylogenetic and phylogeographic inference. Maximum likelihood trees were compared with results of recent studies and with the geographical origin of the samples. As expected for these markers, deep phylogenetic relationships remain partially unclear. However, COI offers unmatched sample and taxon coverage and our results at the subfamily to genus level concur to a large extent with other studies. Southern Ocean myctophids are from at least three distant subfamilies suggesting that colonization has occurred ... Dataset Antarc* Antarctic Southern Ocean Frontiers: Figshare Antarctic Southern Ocean |
institution |
Open Polar |
collection |
Frontiers: Figshare |
op_collection_id |
ftfrontimediafig |
language |
unknown |
topic |
Evolutionary Biology Ecology Invasive Species Ecology Landscape Ecology Conservation and Biodiversity Behavioural Ecology Community Ecology (excl. Invasive Species Ecology) Ecological Physiology Freshwater Ecology Marine and Estuarine Ecology (incl. Marine Ichthyology) Population Ecology Terrestrial Ecology marine biodiversity adaptation Antarctic COI Myctophidae phylogeny rhodopsin |
spellingShingle |
Evolutionary Biology Ecology Invasive Species Ecology Landscape Ecology Conservation and Biodiversity Behavioural Ecology Community Ecology (excl. Invasive Species Ecology) Ecological Physiology Freshwater Ecology Marine and Estuarine Ecology (incl. Marine Ichthyology) Population Ecology Terrestrial Ecology marine biodiversity adaptation Antarctic COI Myctophidae phylogeny rhodopsin Henrik Christiansen Agnès Dettai Franz M. Heindler Martin A. Collins Guy Duhamel Mélyne Hautecoeur Dirk Steinke Filip A. M. Volckaert Anton P. Van de Putte Table_2_Diversity of Mesopelagic Fishes in the Southern Ocean - A Phylogeographic Perspective Using DNA Barcoding.DOCX |
topic_facet |
Evolutionary Biology Ecology Invasive Species Ecology Landscape Ecology Conservation and Biodiversity Behavioural Ecology Community Ecology (excl. Invasive Species Ecology) Ecological Physiology Freshwater Ecology Marine and Estuarine Ecology (incl. Marine Ichthyology) Population Ecology Terrestrial Ecology marine biodiversity adaptation Antarctic COI Myctophidae phylogeny rhodopsin |
description |
Small mesopelagic fish are ubiquitous in the ocean, representing an important trophic link between zooplankton and tertiary consumers such as larger fish, marine mammals and birds. Lanternfishes (Myctophidae) are common worldwide as well as in the Southern Ocean. However, only 17 of the approximately 250 myctophid species occur exclusively in sub-Antarctic or Antarctic waters. It is unclear whether they colonized these latitudes once and diversified from there, or whether multiple colonization events took place in which multiple ancestral phenotypes entered the Southern Ocean at various times. Phylogeographic patterns have been investigated for individual myctophid species, but so far no study has compared species across the Southern Ocean. Here, we present a dataset with previously unpublished cytochrome c oxidase I (COI; n = 299) and rhodopsin (rh1; n = 87) gene sequences from specimens collected at various locations in the Southern Ocean. Our data extend the DNA barcode library of Antarctic mesopelagic fish substantially. Combined morphological and molecular taxonomy lead to confident species level identification in 271 out of 299 cases, providing a robust reference dataset for specimen identification, independently of incomplete morphological characters. This is highly topical in light of prospective ecological metabarcoding studies. Unambiguous sequences were subsequently combined with publicly available sequences of the global DNA barcode library yielding a dataset of over 1,000 individuals for phylogenetic and phylogeographic inference. Maximum likelihood trees were compared with results of recent studies and with the geographical origin of the samples. As expected for these markers, deep phylogenetic relationships remain partially unclear. However, COI offers unmatched sample and taxon coverage and our results at the subfamily to genus level concur to a large extent with other studies. Southern Ocean myctophids are from at least three distant subfamilies suggesting that colonization has occurred ... |
format |
Dataset |
author |
Henrik Christiansen Agnès Dettai Franz M. Heindler Martin A. Collins Guy Duhamel Mélyne Hautecoeur Dirk Steinke Filip A. M. Volckaert Anton P. Van de Putte |
author_facet |
Henrik Christiansen Agnès Dettai Franz M. Heindler Martin A. Collins Guy Duhamel Mélyne Hautecoeur Dirk Steinke Filip A. M. Volckaert Anton P. Van de Putte |
author_sort |
Henrik Christiansen |
title |
Table_2_Diversity of Mesopelagic Fishes in the Southern Ocean - A Phylogeographic Perspective Using DNA Barcoding.DOCX |
title_short |
Table_2_Diversity of Mesopelagic Fishes in the Southern Ocean - A Phylogeographic Perspective Using DNA Barcoding.DOCX |
title_full |
Table_2_Diversity of Mesopelagic Fishes in the Southern Ocean - A Phylogeographic Perspective Using DNA Barcoding.DOCX |
title_fullStr |
Table_2_Diversity of Mesopelagic Fishes in the Southern Ocean - A Phylogeographic Perspective Using DNA Barcoding.DOCX |
title_full_unstemmed |
Table_2_Diversity of Mesopelagic Fishes in the Southern Ocean - A Phylogeographic Perspective Using DNA Barcoding.DOCX |
title_sort |
table_2_diversity of mesopelagic fishes in the southern ocean - a phylogeographic perspective using dna barcoding.docx |
publishDate |
2018 |
url |
https://doi.org/10.3389/fevo.2018.00120.s003 https://figshare.com/articles/Table_2_Diversity_of_Mesopelagic_Fishes_in_the_Southern_Ocean_-_A_Phylogeographic_Perspective_Using_DNA_Barcoding_DOCX/7046249 |
geographic |
Antarctic Southern Ocean |
geographic_facet |
Antarctic Southern Ocean |
genre |
Antarc* Antarctic Southern Ocean |
genre_facet |
Antarc* Antarctic Southern Ocean |
op_relation |
doi:10.3389/fevo.2018.00120.s003 https://figshare.com/articles/Table_2_Diversity_of_Mesopelagic_Fishes_in_the_Southern_Ocean_-_A_Phylogeographic_Perspective_Using_DNA_Barcoding_DOCX/7046249 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.3389/fevo.2018.00120.s003 |
_version_ |
1766264395293261824 |