Table_1_Genome-wide identification of the MAPK gene family in turbot and its involvement in abiotic and biotic stress responses.xlsx
The mitogen-activated protein kinase (MAPK) gene family performs crucial roles in cell division, migration, development, apoptosis, inflammatory response, and abiotic and biotic stress responses. However, very little information is available about the MAPKs in turbot (Scophthalmus maximus). In this...
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ftfrontimediafig:oai:figshare.com:article/21212186 2024-09-15T18:34:00+00:00 Table_1_Genome-wide identification of the MAPK gene family in turbot and its involvement in abiotic and biotic stress responses.xlsx Weiwei Zheng Xi-wen Xu Zechen E Yingjie Liu Songlin Chen 2022-09-27T05:01:28Z https://doi.org/10.3389/fmars.2022.1005401.s004 https://figshare.com/articles/dataset/Table_1_Genome-wide_identification_of_the_MAPK_gene_family_in_turbot_and_its_involvement_in_abiotic_and_biotic_stress_responses_xlsx/21212186 unknown doi:10.3389/fmars.2022.1005401.s004 https://figshare.com/articles/dataset/Table_1_Genome-wide_identification_of_the_MAPK_gene_family_in_turbot_and_its_involvement_in_abiotic_and_biotic_stress_responses_xlsx/21212186 CC BY 4.0 Oceanography Marine Biology Marine Geoscience Biological Oceanography Chemical Oceanography Physical Oceanography Marine Engineering Scophthalmus maximus MAPK biotic stress abiotic stress stress resistance Dataset 2022 ftfrontimediafig https://doi.org/10.3389/fmars.2022.1005401.s004 2024-08-19T06:19:49Z The mitogen-activated protein kinase (MAPK) gene family performs crucial roles in cell division, migration, development, apoptosis, inflammatory response, and abiotic and biotic stress responses. However, very little information is available about the MAPKs in turbot (Scophthalmus maximus). In this study, 15 turbot MAPKs (SmMAPKs) were identified throughout the whole genome, and their basic chemical and physical properties and subcellular localization were illustrated. All SmMAPKs contained the serine/threonine protein kinases, catalytic domain (S_TKc, SMART00220). Phylogenetic analysis revealed that SmMAPKs were classified into three subfamilies, namely, c-Jun NH 2 -terminal kinase (JNK), extracellular signal-regulated kinase (ERK), and p38. Conserved motif and gene structure analysis revealed high levels of conservation within and between phylogenetic subfamilies. Expression patterns of MAPKs in distinct tissues and under diverse abiotic and biotic stresses were examined using the published available RNA-seq data sets. As a result, SmMAPKs showed obviously tissue-specific expression. Furthermore, 7 and 10 candidate stress-responsive MAPK genes were detected under abiotic and biotic stresses, respectively, among which five common MAPK genes, namely, SmMAPK4 (ERK4), SmMAPK6 (ERK3), SmMAPK11 (p38β), SmMAPK12b (p38γ), and SmMAPK15 (ERK7/8) showed extremely significant responses to both abiotic and biotic stresses, demonstrating their potential functions in comprehensive antistress. These results demonstrate that MAPKs might play vital roles in response to various abiotic and biotic stresses in turbot, which would contribute to making scientific preventive measures to environmental changes in the process of farming and promoting the development of selective breeding for comprehensive stress resistance in turbot. Dataset Scophthalmus maximus Turbot Frontiers: Figshare |
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Open Polar |
collection |
Frontiers: Figshare |
op_collection_id |
ftfrontimediafig |
language |
unknown |
topic |
Oceanography Marine Biology Marine Geoscience Biological Oceanography Chemical Oceanography Physical Oceanography Marine Engineering Scophthalmus maximus MAPK biotic stress abiotic stress stress resistance |
spellingShingle |
Oceanography Marine Biology Marine Geoscience Biological Oceanography Chemical Oceanography Physical Oceanography Marine Engineering Scophthalmus maximus MAPK biotic stress abiotic stress stress resistance Weiwei Zheng Xi-wen Xu Zechen E Yingjie Liu Songlin Chen Table_1_Genome-wide identification of the MAPK gene family in turbot and its involvement in abiotic and biotic stress responses.xlsx |
topic_facet |
Oceanography Marine Biology Marine Geoscience Biological Oceanography Chemical Oceanography Physical Oceanography Marine Engineering Scophthalmus maximus MAPK biotic stress abiotic stress stress resistance |
description |
The mitogen-activated protein kinase (MAPK) gene family performs crucial roles in cell division, migration, development, apoptosis, inflammatory response, and abiotic and biotic stress responses. However, very little information is available about the MAPKs in turbot (Scophthalmus maximus). In this study, 15 turbot MAPKs (SmMAPKs) were identified throughout the whole genome, and their basic chemical and physical properties and subcellular localization were illustrated. All SmMAPKs contained the serine/threonine protein kinases, catalytic domain (S_TKc, SMART00220). Phylogenetic analysis revealed that SmMAPKs were classified into three subfamilies, namely, c-Jun NH 2 -terminal kinase (JNK), extracellular signal-regulated kinase (ERK), and p38. Conserved motif and gene structure analysis revealed high levels of conservation within and between phylogenetic subfamilies. Expression patterns of MAPKs in distinct tissues and under diverse abiotic and biotic stresses were examined using the published available RNA-seq data sets. As a result, SmMAPKs showed obviously tissue-specific expression. Furthermore, 7 and 10 candidate stress-responsive MAPK genes were detected under abiotic and biotic stresses, respectively, among which five common MAPK genes, namely, SmMAPK4 (ERK4), SmMAPK6 (ERK3), SmMAPK11 (p38β), SmMAPK12b (p38γ), and SmMAPK15 (ERK7/8) showed extremely significant responses to both abiotic and biotic stresses, demonstrating their potential functions in comprehensive antistress. These results demonstrate that MAPKs might play vital roles in response to various abiotic and biotic stresses in turbot, which would contribute to making scientific preventive measures to environmental changes in the process of farming and promoting the development of selective breeding for comprehensive stress resistance in turbot. |
format |
Dataset |
author |
Weiwei Zheng Xi-wen Xu Zechen E Yingjie Liu Songlin Chen |
author_facet |
Weiwei Zheng Xi-wen Xu Zechen E Yingjie Liu Songlin Chen |
author_sort |
Weiwei Zheng |
title |
Table_1_Genome-wide identification of the MAPK gene family in turbot and its involvement in abiotic and biotic stress responses.xlsx |
title_short |
Table_1_Genome-wide identification of the MAPK gene family in turbot and its involvement in abiotic and biotic stress responses.xlsx |
title_full |
Table_1_Genome-wide identification of the MAPK gene family in turbot and its involvement in abiotic and biotic stress responses.xlsx |
title_fullStr |
Table_1_Genome-wide identification of the MAPK gene family in turbot and its involvement in abiotic and biotic stress responses.xlsx |
title_full_unstemmed |
Table_1_Genome-wide identification of the MAPK gene family in turbot and its involvement in abiotic and biotic stress responses.xlsx |
title_sort |
table_1_genome-wide identification of the mapk gene family in turbot and its involvement in abiotic and biotic stress responses.xlsx |
publishDate |
2022 |
url |
https://doi.org/10.3389/fmars.2022.1005401.s004 https://figshare.com/articles/dataset/Table_1_Genome-wide_identification_of_the_MAPK_gene_family_in_turbot_and_its_involvement_in_abiotic_and_biotic_stress_responses_xlsx/21212186 |
genre |
Scophthalmus maximus Turbot |
genre_facet |
Scophthalmus maximus Turbot |
op_relation |
doi:10.3389/fmars.2022.1005401.s004 https://figshare.com/articles/dataset/Table_1_Genome-wide_identification_of_the_MAPK_gene_family_in_turbot_and_its_involvement_in_abiotic_and_biotic_stress_responses_xlsx/21212186 |
op_rights |
CC BY 4.0 |
op_doi |
https://doi.org/10.3389/fmars.2022.1005401.s004 |
_version_ |
1810475729970790400 |