Data_Sheet_1_Cold-Active Shewanella glacialimarina TZS-4T nov. Features a Temperature-Dependent Fatty Acid Profile and Putative Sialic Acid Metabolism.PDF

• Main Authors: Muhammad Suleman Qasim, Mirka Lampi, Minna-Maria K. Heinonen, Berta Garrido-Zabala, Dennis H. Bamford, Reijo Käkelä, Elina Roine, Leif Peter Sarin
• Format: Dataset
• Language: unknown
• Published: 2021
• Subjects: Microbiology; Microbial Genetics; Microbial Ecology; Mycology; Shewanella; cold-active bacteria; sea ice; sialic acid metabolism; polyunsaturated (essential) fatty acids; Sea ice
• Online Access: https://doi.org/10.3389/fmicb.2021.737641.s001; https://figshare.com/articles/dataset/Data_Sheet_1_Cold-Active_Shewanella_glacialimarina_TZS-4T_nov_Features_a_Temperature-Dependent_Fatty_Acid_Profile_and_Putative_Sialic_Acid_Metabolism_PDF/16714492

Species of genus Shewanella are among the most frequently identified psychrotrophic bacteria. Here, we have studied the cellular properties, growth dynamics, and stress conditions of cold-active Shewanella strain #4, which was previously isolated from Baltic Sea ice. The cells are rod-shaped of ~2μm in length and 0.5μm in diameter, and they grow between 0 and 25°C, with an optimum at 15°C. The bacterium grows at a wide range of conditions, including 0.5–5.5% w/v NaCl (optimum 0.5–2% w/v NaCl), pH 5.5–10 (optimum pH 7.0), and up to 1mM hydrogen peroxide. In keeping with its adaptation to cold habitats, some polyunsaturated fatty acids, such as stearidonic acid (18:4n-3), eicosatetraenoic acid (20:4n-3), and eicosapentaenoic acid (20:5n-3), are produced at a higher level at low temperature. The genome is 4,456kb in size and has a GC content of 41.12%. Uniquely, strain #4 possesses genes for sialic acid metabolism and utilizes N-acetyl neuraminic acid as a carbon source. Interestingly, it also encodes for cytochrome c3 genes, which are known to facilitate environmental adaptation, including elevated temperatures and exposure to UV radiation. Phylogenetic analysis based on a consensus sequence of the seven 16S rRNA genes indicated that strain #4 belongs to genus Shewanella, closely associated with Shewanella aestuarii with a ~97% similarity, but with a low DNA–DNA hybridization (DDH) level of ~21%. However, average nucleotide identity (ANI) analysis defines strain #4 as a separate Shewanella species (ANI score=76). Further phylogenetic analysis based on the 92 most conserved genes places Shewanella strain #4 into a distinct phylogenetic clade with other cold-active marine Shewanella species. Considering the phylogenetic, phenotypic, and molecular characterization, we conclude that Shewanella strain #4 is a novel species and name it Shewanella glacialimarina sp. nov. TZS-4 T , where glacialimarina means sea ice. Consequently, S. glacialimarina TZS-4 T constitutes a promising model for studying transcriptional and ...