Table_1_First Coronavirus Active Survey in Rodents From the Canary Islands.DOCX
Since the beginning of the 21st century five new coronaviruses inducing respiratory diseases in humans have been reported. These emergences has promoted research on coronaviruses in wildlife. We started the first eco-epidemiological study to screen the presence of coronaviruses circulating in mice a...
Main Authors: | , , , , , , , , |
---|---|
Format: | Dataset |
Language: | unknown |
Published: |
2021
|
Subjects: | |
Online Access: | https://doi.org/10.3389/fvets.2021.708079.s001 https://figshare.com/articles/dataset/Table_1_First_Coronavirus_Active_Survey_in_Rodents_From_the_Canary_Islands_DOCX/15185238 |
id |
ftfrontimediafig:oai:figshare.com:article/15185238 |
---|---|
record_format |
openpolar |
spelling |
ftfrontimediafig:oai:figshare.com:article/15185238 2023-05-15T18:05:42+02:00 Table_1_First Coronavirus Active Survey in Rodents From the Canary Islands.DOCX Abir Monastiri Natalia Martín-Carrillo Pilar Foronda Elena Izquierdo-Rodríguez Carles Feliu Marc López-Roig Jordi Miquel Meriadeg Ar Gouilh Jordi Serra-Cobo 2021-08-18T04:46:11Z https://doi.org/10.3389/fvets.2021.708079.s001 https://figshare.com/articles/dataset/Table_1_First_Coronavirus_Active_Survey_in_Rodents_From_the_Canary_Islands_DOCX/15185238 unknown doi:10.3389/fvets.2021.708079.s001 https://figshare.com/articles/dataset/Table_1_First_Coronavirus_Active_Survey_in_Rodents_From_the_Canary_Islands_DOCX/15185238 CC BY 4.0 CC-BY Animal Systematics and Taxonomy Animal Physiology - Biophysics Animal Physiology - Cell Animal Physiology - Systems Animal Behaviour Animal Cell and Molecular Biology Animal Developmental and Reproductive Biology Animal Immunology Animal Neurobiology Animal Physiological Ecology Animal Structure and Function Veterinary Anaesthesiology and Intensive Care Veterinary Anatomy and Physiology Veterinary Diagnosis and Diagnostics Veterinary Epidemiology Veterinary Immunology Veterinary Medicine Veterinary Microbiology (excl. Virology) Veterinary Parasitology Veterinary Pathology Veterinary Pharmacology Veterinary Surgery Veterinary Virology Veterinary Sciences not elsewhere classified Betacoronavirus Embecovirus Murine coronavirus rodents Canary Islands coronavirus Dataset 2021 ftfrontimediafig https://doi.org/10.3389/fvets.2021.708079.s001 2021-08-18T22:58:29Z Since the beginning of the 21st century five new coronaviruses inducing respiratory diseases in humans have been reported. These emergences has promoted research on coronaviruses in wildlife. We started the first eco-epidemiological study to screen the presence of coronaviruses circulating in mice and rats of four Canary Islands. Between 2015 and 2019, we obtained fecal samples of three rodent species (150 Mus musculus, 109 Rattus rattus and 1 Rattus norvegicus) captured in urban and rural areas. Fecal samples were analyzed by nRT-PCR and the resulting sequences were compared to known diversity using Bayesian phylogenetic methods. We only found coronavirus RNA in house mice from El Hierro (10.53%), Tenerife (7.02%) and Lanzarote (5.26%) islands. All coronaviruses detected belong to the species Murine coronavirus belonging to the genus Betacoronavirus and subgenus Embecovirus, being all positive house mice captured in anthropogenic environment. The phylogenetic analysis shows that murine coronaviruses from the Canary Islands are related to European murine coronaviruses. Albeit data are still scarce in the region, the most probable origin of M. coronavirus present in the Canary Islands is continental Europe. According to temporal Bayesian phylogenetics, the differentiation between Canary and continental viruses seems to be quite recent. Moreover, murine coronaviruses from El Hierro, Tenerife and Lanzarote islands tend to segregate in different clades. This enlightens the potential role of rodents or other possibly invasive species in disseminating infectious diseases to remote places through exchanges with the continent. It is important to consider these aspects in the sanitary control of islands, for health and biodiversity preservation concerns. Dataset Rattus rattus Frontiers: Figshare |
institution |
Open Polar |
collection |
Frontiers: Figshare |
op_collection_id |
ftfrontimediafig |
language |
unknown |
topic |
Animal Systematics and Taxonomy Animal Physiology - Biophysics Animal Physiology - Cell Animal Physiology - Systems Animal Behaviour Animal Cell and Molecular Biology Animal Developmental and Reproductive Biology Animal Immunology Animal Neurobiology Animal Physiological Ecology Animal Structure and Function Veterinary Anaesthesiology and Intensive Care Veterinary Anatomy and Physiology Veterinary Diagnosis and Diagnostics Veterinary Epidemiology Veterinary Immunology Veterinary Medicine Veterinary Microbiology (excl. Virology) Veterinary Parasitology Veterinary Pathology Veterinary Pharmacology Veterinary Surgery Veterinary Virology Veterinary Sciences not elsewhere classified Betacoronavirus Embecovirus Murine coronavirus rodents Canary Islands coronavirus |
spellingShingle |
Animal Systematics and Taxonomy Animal Physiology - Biophysics Animal Physiology - Cell Animal Physiology - Systems Animal Behaviour Animal Cell and Molecular Biology Animal Developmental and Reproductive Biology Animal Immunology Animal Neurobiology Animal Physiological Ecology Animal Structure and Function Veterinary Anaesthesiology and Intensive Care Veterinary Anatomy and Physiology Veterinary Diagnosis and Diagnostics Veterinary Epidemiology Veterinary Immunology Veterinary Medicine Veterinary Microbiology (excl. Virology) Veterinary Parasitology Veterinary Pathology Veterinary Pharmacology Veterinary Surgery Veterinary Virology Veterinary Sciences not elsewhere classified Betacoronavirus Embecovirus Murine coronavirus rodents Canary Islands coronavirus Abir Monastiri Natalia Martín-Carrillo Pilar Foronda Elena Izquierdo-Rodríguez Carles Feliu Marc López-Roig Jordi Miquel Meriadeg Ar Gouilh Jordi Serra-Cobo Table_1_First Coronavirus Active Survey in Rodents From the Canary Islands.DOCX |
topic_facet |
Animal Systematics and Taxonomy Animal Physiology - Biophysics Animal Physiology - Cell Animal Physiology - Systems Animal Behaviour Animal Cell and Molecular Biology Animal Developmental and Reproductive Biology Animal Immunology Animal Neurobiology Animal Physiological Ecology Animal Structure and Function Veterinary Anaesthesiology and Intensive Care Veterinary Anatomy and Physiology Veterinary Diagnosis and Diagnostics Veterinary Epidemiology Veterinary Immunology Veterinary Medicine Veterinary Microbiology (excl. Virology) Veterinary Parasitology Veterinary Pathology Veterinary Pharmacology Veterinary Surgery Veterinary Virology Veterinary Sciences not elsewhere classified Betacoronavirus Embecovirus Murine coronavirus rodents Canary Islands coronavirus |
description |
Since the beginning of the 21st century five new coronaviruses inducing respiratory diseases in humans have been reported. These emergences has promoted research on coronaviruses in wildlife. We started the first eco-epidemiological study to screen the presence of coronaviruses circulating in mice and rats of four Canary Islands. Between 2015 and 2019, we obtained fecal samples of three rodent species (150 Mus musculus, 109 Rattus rattus and 1 Rattus norvegicus) captured in urban and rural areas. Fecal samples were analyzed by nRT-PCR and the resulting sequences were compared to known diversity using Bayesian phylogenetic methods. We only found coronavirus RNA in house mice from El Hierro (10.53%), Tenerife (7.02%) and Lanzarote (5.26%) islands. All coronaviruses detected belong to the species Murine coronavirus belonging to the genus Betacoronavirus and subgenus Embecovirus, being all positive house mice captured in anthropogenic environment. The phylogenetic analysis shows that murine coronaviruses from the Canary Islands are related to European murine coronaviruses. Albeit data are still scarce in the region, the most probable origin of M. coronavirus present in the Canary Islands is continental Europe. According to temporal Bayesian phylogenetics, the differentiation between Canary and continental viruses seems to be quite recent. Moreover, murine coronaviruses from El Hierro, Tenerife and Lanzarote islands tend to segregate in different clades. This enlightens the potential role of rodents or other possibly invasive species in disseminating infectious diseases to remote places through exchanges with the continent. It is important to consider these aspects in the sanitary control of islands, for health and biodiversity preservation concerns. |
format |
Dataset |
author |
Abir Monastiri Natalia Martín-Carrillo Pilar Foronda Elena Izquierdo-Rodríguez Carles Feliu Marc López-Roig Jordi Miquel Meriadeg Ar Gouilh Jordi Serra-Cobo |
author_facet |
Abir Monastiri Natalia Martín-Carrillo Pilar Foronda Elena Izquierdo-Rodríguez Carles Feliu Marc López-Roig Jordi Miquel Meriadeg Ar Gouilh Jordi Serra-Cobo |
author_sort |
Abir Monastiri |
title |
Table_1_First Coronavirus Active Survey in Rodents From the Canary Islands.DOCX |
title_short |
Table_1_First Coronavirus Active Survey in Rodents From the Canary Islands.DOCX |
title_full |
Table_1_First Coronavirus Active Survey in Rodents From the Canary Islands.DOCX |
title_fullStr |
Table_1_First Coronavirus Active Survey in Rodents From the Canary Islands.DOCX |
title_full_unstemmed |
Table_1_First Coronavirus Active Survey in Rodents From the Canary Islands.DOCX |
title_sort |
table_1_first coronavirus active survey in rodents from the canary islands.docx |
publishDate |
2021 |
url |
https://doi.org/10.3389/fvets.2021.708079.s001 https://figshare.com/articles/dataset/Table_1_First_Coronavirus_Active_Survey_in_Rodents_From_the_Canary_Islands_DOCX/15185238 |
genre |
Rattus rattus |
genre_facet |
Rattus rattus |
op_relation |
doi:10.3389/fvets.2021.708079.s001 https://figshare.com/articles/dataset/Table_1_First_Coronavirus_Active_Survey_in_Rodents_From_the_Canary_Islands_DOCX/15185238 |
op_rights |
CC BY 4.0 |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.3389/fvets.2021.708079.s001 |
_version_ |
1766177206445277184 |