Paracoccus nototheniae sp. nov., isolated from a black rock cod fish (Notothenia coriiceps) from the Chilean Antarctic
S.2794-2800 An orange-pigmented, oxidase-positive bacterial strain (I-41R45(T)), isolated from the kidney of a black rock cod fish sampled in the Chilean Antarctic was studied in a polyphasic taxonomic investigation. Cells of the isolate were coccoid and stained Gram-negative. A comparison of the 16...
Published in: | International Journal of Systematic and Evolutionary Microbiology |
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ftfrauneprints:oai:publica.fraunhofer.de:publica/260162 2024-05-12T07:56:39+00:00 Paracoccus nototheniae sp. nov., isolated from a black rock cod fish (Notothenia coriiceps) from the Chilean Antarctic Kämpfer, P. Irgang, R. Poblete-Morales, M. Fernandez-Negrete, G. Glaeser, S.P. Fuentes-Messina, D. Avendano-Herrera, R. 2019 https://publica.fraunhofer.de/handle/publica/260162 https://doi.org/10.1099/ijsem.0.003557 en eng International journal of systematic and evolutionary microbiology : IJSEM doi:10.1099/ijsem.0.003557 https://publica.fraunhofer.de/handle/publica/260162 579 journal article 2019 ftfrauneprints https://doi.org/10.1099/ijsem.0.003557 2024-04-17T14:25:26Z S.2794-2800 An orange-pigmented, oxidase-positive bacterial strain (I-41R45(T)), isolated from the kidney of a black rock cod fish sampled in the Chilean Antarctic was studied in a polyphasic taxonomic investigation. Cells of the isolate were coccoid and stained Gram-negative. A comparison of the 16S rRNA gene sequence of strain I-41R45(T) with sequences of type strains of most closely related Paracoccus species showed highest sequence similarities to Paracoccus hibiscisoli (98.4 %), Paracoccus marcusii (98.3%), Paracoccus haeundaensis and Paracoccus carotinifaciens (both 98.2%). 16S rRNA gene sequence similarities to all other Paracoccus species were below 97%. The draft genome of strain I-41R45(T) had a size of 4.59 Mb with a DNA G+C content of 65.26 mol% and included the prediction and annotation of 4426 coding genes, 1973 protein-coding genes and 46 tRNAs. The fatty acid profile of strain I-41R45(T) consisted mainly of the major fatty acids C-18 : 1 omega 7c/omega 9t/omega 12t and C-18: 0, typical of the genus Paracoccus. DNA-DNA hybridizations between I-41R45(T) and type strains of P. hibiscisoli, P. marcusii and P. haeundaensis resulted in similarity values of 45% (reciprocal 26 %), 66% (reciprocal 61 %), and 29% (reciprocal 36 %), respectively. DNA-DNA hybridization results, together with the differentiating biochemical and chemotaxonomic properties, showed that strain I-41R45(T) represents a novel Paracoccus species, for which the name Paracoccus nototheniae sp. nov. (type strain I-41R45(T)=CCM 8875(T)=CIP 111632(T)), is proposed. 69 Nr.9 Article in Journal/Newspaper Antarc* Antarctic Publikationsdatenbank der Fraunhofer-Gesellschaft Antarctic Black Rock International Journal of Systematic and Evolutionary Microbiology 69 9 2794 2800 |
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Publikationsdatenbank der Fraunhofer-Gesellschaft |
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ftfrauneprints |
language |
English |
topic |
579 |
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579 Kämpfer, P. Irgang, R. Poblete-Morales, M. Fernandez-Negrete, G. Glaeser, S.P. Fuentes-Messina, D. Avendano-Herrera, R. Paracoccus nototheniae sp. nov., isolated from a black rock cod fish (Notothenia coriiceps) from the Chilean Antarctic |
topic_facet |
579 |
description |
S.2794-2800 An orange-pigmented, oxidase-positive bacterial strain (I-41R45(T)), isolated from the kidney of a black rock cod fish sampled in the Chilean Antarctic was studied in a polyphasic taxonomic investigation. Cells of the isolate were coccoid and stained Gram-negative. A comparison of the 16S rRNA gene sequence of strain I-41R45(T) with sequences of type strains of most closely related Paracoccus species showed highest sequence similarities to Paracoccus hibiscisoli (98.4 %), Paracoccus marcusii (98.3%), Paracoccus haeundaensis and Paracoccus carotinifaciens (both 98.2%). 16S rRNA gene sequence similarities to all other Paracoccus species were below 97%. The draft genome of strain I-41R45(T) had a size of 4.59 Mb with a DNA G+C content of 65.26 mol% and included the prediction and annotation of 4426 coding genes, 1973 protein-coding genes and 46 tRNAs. The fatty acid profile of strain I-41R45(T) consisted mainly of the major fatty acids C-18 : 1 omega 7c/omega 9t/omega 12t and C-18: 0, typical of the genus Paracoccus. DNA-DNA hybridizations between I-41R45(T) and type strains of P. hibiscisoli, P. marcusii and P. haeundaensis resulted in similarity values of 45% (reciprocal 26 %), 66% (reciprocal 61 %), and 29% (reciprocal 36 %), respectively. DNA-DNA hybridization results, together with the differentiating biochemical and chemotaxonomic properties, showed that strain I-41R45(T) represents a novel Paracoccus species, for which the name Paracoccus nototheniae sp. nov. (type strain I-41R45(T)=CCM 8875(T)=CIP 111632(T)), is proposed. 69 Nr.9 |
format |
Article in Journal/Newspaper |
author |
Kämpfer, P. Irgang, R. Poblete-Morales, M. Fernandez-Negrete, G. Glaeser, S.P. Fuentes-Messina, D. Avendano-Herrera, R. |
author_facet |
Kämpfer, P. Irgang, R. Poblete-Morales, M. Fernandez-Negrete, G. Glaeser, S.P. Fuentes-Messina, D. Avendano-Herrera, R. |
author_sort |
Kämpfer, P. |
title |
Paracoccus nototheniae sp. nov., isolated from a black rock cod fish (Notothenia coriiceps) from the Chilean Antarctic |
title_short |
Paracoccus nototheniae sp. nov., isolated from a black rock cod fish (Notothenia coriiceps) from the Chilean Antarctic |
title_full |
Paracoccus nototheniae sp. nov., isolated from a black rock cod fish (Notothenia coriiceps) from the Chilean Antarctic |
title_fullStr |
Paracoccus nototheniae sp. nov., isolated from a black rock cod fish (Notothenia coriiceps) from the Chilean Antarctic |
title_full_unstemmed |
Paracoccus nototheniae sp. nov., isolated from a black rock cod fish (Notothenia coriiceps) from the Chilean Antarctic |
title_sort |
paracoccus nototheniae sp. nov., isolated from a black rock cod fish (notothenia coriiceps) from the chilean antarctic |
publishDate |
2019 |
url |
https://publica.fraunhofer.de/handle/publica/260162 https://doi.org/10.1099/ijsem.0.003557 |
geographic |
Antarctic Black Rock |
geographic_facet |
Antarctic Black Rock |
genre |
Antarc* Antarctic |
genre_facet |
Antarc* Antarctic |
op_relation |
International journal of systematic and evolutionary microbiology : IJSEM doi:10.1099/ijsem.0.003557 https://publica.fraunhofer.de/handle/publica/260162 |
op_doi |
https://doi.org/10.1099/ijsem.0.003557 |
container_title |
International Journal of Systematic and Evolutionary Microbiology |
container_volume |
69 |
container_issue |
9 |
container_start_page |
2794 |
op_container_end_page |
2800 |
_version_ |
1798836825108774912 |