Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae
International audience Microbial communities in the world ocean are affected strongly by oceanic circulation, creating characteristic marine biomes. The high connectivity of most of the ocean makes it difficult to disentangle selective retention of colonizing genotypes (with traits suited to biome s...
Published in: | Life Science Alliance |
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Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Other Authors: | , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
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HAL CCSD
2023
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Online Access: | https://cea.hal.science/cea-04321515 https://doi.org/10.26508/lsa.202201833 |
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English |
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[SDV]Life Sciences [q-bio] |
spellingShingle |
[SDV]Life Sciences [q-bio] Dorrell, Richard Kuo, Alan Füssy, Zoltan Richardson, Elisabeth Salamov, Asaf Zarevski, Nikola Freyria, Nastasia Ibarbalz, Federico Jenkins, Jerry Pierella Karlusich, Juan Jose Stecca Steindorff, Andrei Edgar, Robyn Handley, Lori Lail, Kathleen Lipzen, Anna Lombard, Vincent Mcfarlane, John Nef, Charlotte Novák Vanclová, Anna Mg Peng, Yi Plott, Chris Potvin, Marianne Vieira, Fabio Rocha Jimenez Barry, Kerrie de Vargas, Colomban Henrissat, Bernard Pelletier, Eric Schmutz, Jeremy Wincker, Patrick Dacks, Joel Bowler, Chris Grigoriev, Igor Lovejoy, Connie Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae |
topic_facet |
[SDV]Life Sciences [q-bio] |
description |
International audience Microbial communities in the world ocean are affected strongly by oceanic circulation, creating characteristic marine biomes. The high connectivity of most of the ocean makes it difficult to disentangle selective retention of colonizing genotypes (with traits suited to biome specific conditions) from evolutionary selection, which would act on founder genotypes over time. The Arctic Ocean is exceptional with limited exchange with other oceans and ice covered since the last ice age. To test whether Arctic microalgal lineages evolved apart from algae in the global ocean, we sequenced four lineages of microalgae isolated from Arctic waters and sea ice. Here we show convergent evolution and highlight geographically limited HGT as an ecological adaptive force in the form of PFAM complements and horizontal acquisition of key adaptive genes. Notably, ice-binding proteins were acquired and horizontally transferred among Arctic strains. A comparison with Tara Oceans metagenomes and metatranscriptomes confirmed mostly Arctic distributions of these IBPs. The phylogeny of Arctic-specific genes indicated that these events were independent of bacterial-sourced HGTs in Antarctic Southern Ocean microalgae. |
author2 |
Génomique métabolique (UMR 8030) Genoscope - Centre national de séquençage Evry (GENOSCOPE) Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS) Global Oceans Systems Ecology & Evolution - Tara Oceans (GOSEE) Université de Perpignan Via Domitia (UPVD)-École Pratique des Hautes Études (EPHE) Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Aix Marseille Université (AMU)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Université de Toulon (UTLN)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes 2016-2019 (UGA 2016-2019 )-Institut de Recherche pour le Développement (IRD France-Nord )-Ecole Normale Supérieure Paris-Saclay (ENS Paris Saclay)-European Molecular Biology Laboratory (EMBL)-NANTES UNIVERSITÉ - École Centrale de Nantes (Nantes Univ - ECN) Nantes Université (Nantes Univ)-Nantes Université (Nantes Univ)-Université australe du Chili |
format |
Article in Journal/Newspaper |
author |
Dorrell, Richard Kuo, Alan Füssy, Zoltan Richardson, Elisabeth Salamov, Asaf Zarevski, Nikola Freyria, Nastasia Ibarbalz, Federico Jenkins, Jerry Pierella Karlusich, Juan Jose Stecca Steindorff, Andrei Edgar, Robyn Handley, Lori Lail, Kathleen Lipzen, Anna Lombard, Vincent Mcfarlane, John Nef, Charlotte Novák Vanclová, Anna Mg Peng, Yi Plott, Chris Potvin, Marianne Vieira, Fabio Rocha Jimenez Barry, Kerrie de Vargas, Colomban Henrissat, Bernard Pelletier, Eric Schmutz, Jeremy Wincker, Patrick Dacks, Joel Bowler, Chris Grigoriev, Igor Lovejoy, Connie |
author_facet |
Dorrell, Richard Kuo, Alan Füssy, Zoltan Richardson, Elisabeth Salamov, Asaf Zarevski, Nikola Freyria, Nastasia Ibarbalz, Federico Jenkins, Jerry Pierella Karlusich, Juan Jose Stecca Steindorff, Andrei Edgar, Robyn Handley, Lori Lail, Kathleen Lipzen, Anna Lombard, Vincent Mcfarlane, John Nef, Charlotte Novák Vanclová, Anna Mg Peng, Yi Plott, Chris Potvin, Marianne Vieira, Fabio Rocha Jimenez Barry, Kerrie de Vargas, Colomban Henrissat, Bernard Pelletier, Eric Schmutz, Jeremy Wincker, Patrick Dacks, Joel Bowler, Chris Grigoriev, Igor Lovejoy, Connie |
author_sort |
Dorrell, Richard |
title |
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae |
title_short |
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae |
title_full |
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae |
title_fullStr |
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae |
title_full_unstemmed |
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae |
title_sort |
convergent evolution and horizontal gene transfer in arctic ocean microalgae |
publisher |
HAL CCSD |
publishDate |
2023 |
url |
https://cea.hal.science/cea-04321515 https://doi.org/10.26508/lsa.202201833 |
genre |
Antarc* Antarctic Arctic Arctic Ocean Sea ice Southern Ocean |
genre_facet |
Antarc* Antarctic Arctic Arctic Ocean Sea ice Southern Ocean |
op_source |
ISSN: 2575-1077 Life Science Alliance https://cea.hal.science/cea-04321515 Life Science Alliance, 2023, 6 (3), pp.e202201833. ⟨10.26508/lsa.202201833⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.26508/lsa.202201833 cea-04321515 https://cea.hal.science/cea-04321515 doi:10.26508/lsa.202201833 |
op_doi |
https://doi.org/10.26508/lsa.202201833 |
container_title |
Life Science Alliance |
container_volume |
6 |
container_issue |
3 |
container_start_page |
e202201833 |
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1799469650354896896 |
spelling |
ftecolephe:oai:HAL:cea-04321515v1 2024-05-19T07:31:46+00:00 Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae Dorrell, Richard Kuo, Alan Füssy, Zoltan Richardson, Elisabeth Salamov, Asaf Zarevski, Nikola Freyria, Nastasia Ibarbalz, Federico Jenkins, Jerry Pierella Karlusich, Juan Jose Stecca Steindorff, Andrei Edgar, Robyn Handley, Lori Lail, Kathleen Lipzen, Anna Lombard, Vincent Mcfarlane, John Nef, Charlotte Novák Vanclová, Anna Mg Peng, Yi Plott, Chris Potvin, Marianne Vieira, Fabio Rocha Jimenez Barry, Kerrie de Vargas, Colomban Henrissat, Bernard Pelletier, Eric Schmutz, Jeremy Wincker, Patrick Dacks, Joel Bowler, Chris Grigoriev, Igor Lovejoy, Connie Génomique métabolique (UMR 8030) Genoscope - Centre national de séquençage Evry (GENOSCOPE) Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Paris-Saclay-Direction de Recherche Fondamentale (CEA) (DRF (CEA)) Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Centre National de la Recherche Scientifique (CNRS) Global Oceans Systems Ecology & Evolution - Tara Oceans (GOSEE) Université de Perpignan Via Domitia (UPVD)-École Pratique des Hautes Études (EPHE) Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Aix Marseille Université (AMU)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université d'Évry-Val-d'Essonne (UEVE)-Université de Toulon (UTLN)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Université Paris-Saclay-Centre National de la Recherche Scientifique (CNRS)-Université Grenoble Alpes 2016-2019 (UGA 2016-2019 )-Institut de Recherche pour le Développement (IRD France-Nord )-Ecole Normale Supérieure Paris-Saclay (ENS Paris Saclay)-European Molecular Biology Laboratory (EMBL)-NANTES UNIVERSITÉ - École Centrale de Nantes (Nantes Univ - ECN) Nantes Université (Nantes Univ)-Nantes Université (Nantes Univ)-Université australe du Chili 2023-03-15 https://cea.hal.science/cea-04321515 https://doi.org/10.26508/lsa.202201833 en eng HAL CCSD Life Science Alliance LLC info:eu-repo/semantics/altIdentifier/doi/10.26508/lsa.202201833 cea-04321515 https://cea.hal.science/cea-04321515 doi:10.26508/lsa.202201833 ISSN: 2575-1077 Life Science Alliance https://cea.hal.science/cea-04321515 Life Science Alliance, 2023, 6 (3), pp.e202201833. ⟨10.26508/lsa.202201833⟩ [SDV]Life Sciences [q-bio] info:eu-repo/semantics/article Journal articles 2023 ftecolephe https://doi.org/10.26508/lsa.202201833 2024-04-25T01:01:09Z International audience Microbial communities in the world ocean are affected strongly by oceanic circulation, creating characteristic marine biomes. The high connectivity of most of the ocean makes it difficult to disentangle selective retention of colonizing genotypes (with traits suited to biome specific conditions) from evolutionary selection, which would act on founder genotypes over time. The Arctic Ocean is exceptional with limited exchange with other oceans and ice covered since the last ice age. To test whether Arctic microalgal lineages evolved apart from algae in the global ocean, we sequenced four lineages of microalgae isolated from Arctic waters and sea ice. Here we show convergent evolution and highlight geographically limited HGT as an ecological adaptive force in the form of PFAM complements and horizontal acquisition of key adaptive genes. Notably, ice-binding proteins were acquired and horizontally transferred among Arctic strains. A comparison with Tara Oceans metagenomes and metatranscriptomes confirmed mostly Arctic distributions of these IBPs. The phylogeny of Arctic-specific genes indicated that these events were independent of bacterial-sourced HGTs in Antarctic Southern Ocean microalgae. Article in Journal/Newspaper Antarc* Antarctic Arctic Arctic Ocean Sea ice Southern Ocean EPHE (Ecole pratique des hautes études, Paris): HAL Life Science Alliance 6 3 e202201833 |