Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci
Atlantic herring is widespread in North Atlantic and adjacent waters and is one of the most abundant vertebrates on earth. This species is well suited to explore genetic adaptation due to minute genetic differentiation at selectively neutral loci. Here we report hundreds of loci underlying ecologica...
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2020
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Online Access: | https://orbit.dtu.dk/en/publications/981c3750-cc79-4364-a344-d76e50290140 https://doi.org/10.7554/eLife.61076 https://backend.orbit.dtu.dk/ws/files/235710213/elife_61076_v1.pdf https://backend.orbit.dtu.dk/ws/files/236332366/elife_61076_v2.pdf |
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ftdtupubl:oai:pure.atira.dk:publications/981c3750-cc79-4364-a344-d76e50290140 2024-09-15T18:22:46+00:00 Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci Han, Fan Jamsandekar, Minal Pettersson, Mats E. Su, Leyi Fuentes-Pardo, Angela Davis, Brian Bekkevold, Dorte Berg, Florian Casini, Michele Dahle, Geir Farrell, Edward D. Folkvord, Arild Andersson, Leif 2020 application/pdf https://orbit.dtu.dk/en/publications/981c3750-cc79-4364-a344-d76e50290140 https://doi.org/10.7554/eLife.61076 https://backend.orbit.dtu.dk/ws/files/235710213/elife_61076_v1.pdf https://backend.orbit.dtu.dk/ws/files/236332366/elife_61076_v2.pdf eng eng https://orbit.dtu.dk/en/publications/981c3750-cc79-4364-a344-d76e50290140 info:eu-repo/semantics/openAccess Han , F , Jamsandekar , M , Pettersson , M E , Su , L , Fuentes-Pardo , A , Davis , B , Bekkevold , D , Berg , F , Casini , M , Dahle , G , Farrell , E D , Folkvord , A & Andersson , L 2020 , ' Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci ' , eLife , vol. 9 , e61076 . https://doi.org/10.7554/eLife.61076 article 2020 ftdtupubl https://doi.org/10.7554/eLife.61076 2024-08-13T00:03:06Z Atlantic herring is widespread in North Atlantic and adjacent waters and is one of the most abundant vertebrates on earth. This species is well suited to explore genetic adaptation due to minute genetic differentiation at selectively neutral loci. Here we report hundreds of loci underlying ecological adaptation to different geographic areas and spawning conditions. Four of these represent megabase inversions confirmed by long read sequencing. The genetic architecture underlying ecological adaptation in herring deviates from expectation under a classical infinitesimal model for complex traits because of large shifts in allele frequencies at hundreds of loci under selection. Article in Journal/Newspaper North Atlantic Technical University of Denmark: DTU Orbit eLife 9 |
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Open Polar |
collection |
Technical University of Denmark: DTU Orbit |
op_collection_id |
ftdtupubl |
language |
English |
description |
Atlantic herring is widespread in North Atlantic and adjacent waters and is one of the most abundant vertebrates on earth. This species is well suited to explore genetic adaptation due to minute genetic differentiation at selectively neutral loci. Here we report hundreds of loci underlying ecological adaptation to different geographic areas and spawning conditions. Four of these represent megabase inversions confirmed by long read sequencing. The genetic architecture underlying ecological adaptation in herring deviates from expectation under a classical infinitesimal model for complex traits because of large shifts in allele frequencies at hundreds of loci under selection. |
format |
Article in Journal/Newspaper |
author |
Han, Fan Jamsandekar, Minal Pettersson, Mats E. Su, Leyi Fuentes-Pardo, Angela Davis, Brian Bekkevold, Dorte Berg, Florian Casini, Michele Dahle, Geir Farrell, Edward D. Folkvord, Arild Andersson, Leif |
spellingShingle |
Han, Fan Jamsandekar, Minal Pettersson, Mats E. Su, Leyi Fuentes-Pardo, Angela Davis, Brian Bekkevold, Dorte Berg, Florian Casini, Michele Dahle, Geir Farrell, Edward D. Folkvord, Arild Andersson, Leif Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci |
author_facet |
Han, Fan Jamsandekar, Minal Pettersson, Mats E. Su, Leyi Fuentes-Pardo, Angela Davis, Brian Bekkevold, Dorte Berg, Florian Casini, Michele Dahle, Geir Farrell, Edward D. Folkvord, Arild Andersson, Leif |
author_sort |
Han, Fan |
title |
Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci |
title_short |
Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci |
title_full |
Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci |
title_fullStr |
Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci |
title_full_unstemmed |
Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci |
title_sort |
ecological adaptation in atlantic herring is associated with large shifts in allele frequencies at hundreds of loci |
publishDate |
2020 |
url |
https://orbit.dtu.dk/en/publications/981c3750-cc79-4364-a344-d76e50290140 https://doi.org/10.7554/eLife.61076 https://backend.orbit.dtu.dk/ws/files/235710213/elife_61076_v1.pdf https://backend.orbit.dtu.dk/ws/files/236332366/elife_61076_v2.pdf |
genre |
North Atlantic |
genre_facet |
North Atlantic |
op_source |
Han , F , Jamsandekar , M , Pettersson , M E , Su , L , Fuentes-Pardo , A , Davis , B , Bekkevold , D , Berg , F , Casini , M , Dahle , G , Farrell , E D , Folkvord , A & Andersson , L 2020 , ' Ecological adaptation in Atlantic herring is associated with large shifts in allele frequencies at hundreds of loci ' , eLife , vol. 9 , e61076 . https://doi.org/10.7554/eLife.61076 |
op_relation |
https://orbit.dtu.dk/en/publications/981c3750-cc79-4364-a344-d76e50290140 |
op_rights |
info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.7554/eLife.61076 |
container_title |
eLife |
container_volume |
9 |
_version_ |
1810462767350546432 |