Global oceanic diazotroph database version 2 and elevated estimate of global oceanic N 2 fixation

Marine diazotrophs convert dinitrogen (N2) gas into bioavailable nitrogen (N), supporting life in the global ocean. In 2012, the first version of the global oceanic diazotroph database (version 1) was published. Here, we present an updated version of the database (version 2), significantly increasin...

Full description

Bibliographic Details
Published in:Earth System Science Data
Main Authors: Shao, Zhibo, Xu, Yangchun, Wang, Hua, Luo, Weicheng, Wang, Lice, Huang, Yuhong, Agawin, Nona Sheila R., Ahmed, Ayaz, Benavides, Mar, Bentzon-Tilia, Mikkel, Berman-Frank, Ilana, Berthelot, Hugo, Biegala, Isabelle C., Bif, Mariana B., Bode, Antonio, Bonnet, Sophie, Bronk, Deborah A., Brown, Mark V., Campbell, Lisa, Capone, Douglas G., Carpenter, Edward J., Cassar, Nicolas, Chang, Bonnie X., Chappell, Dreux, Chen, Yuh-ling Lee, Church, Matthew J., Cornejo-Castillo, Francisco M., Detoni, Amália Maria Sacilotto, Doney, Scott C., Dupouy, Cecile, Estrada, Marta, Fernandez, Camila, Fernández-Castro, Bieito, Fonseca-Batista, Debany, Foster, Rachel A., Furuya, Ken, Garcia, Nicole, Goto, Kanji, Gago, Jesús, Gradoville, Mary R., Hamersley, M. Robert, Henke, Britt A., Hörstmann, Cora, Jayakumar, Amal, Jiang, Zhibing, Kao, Shuh-Ji, Karl, David M., Kittu, Leila R., Knapp, Angela N., Kumar, Sanjeev, LaRoche, Julie, Liu, Hongbin, Liu, Jiaxing, Lory, Caroline, Löscher, Carolin R., Marañón, Emilio, Messer, Lauren F., Mills, Matthew M., Mohr, Wiebke, Moisander, Pia H., Mahaffey, Claire, Moore, Robert, Mouriño-Carballido, Beatriz, Mulholland, Margaret R., Nakaoka, Shin-ichiro, Needoba, Joseph A., Raes, Eric J., Rahav, Eyal, Ramírez-Cárdenas, Teodoro, Reeder, Christian Furbo, Riemann, Lasse, Riou, Virginie, Robidart, Julie C., Sarma, Vedula V. S. S., Sato, Takuya, Saxena, Himanshu, Selden, Corday, Seymour, Justin R., Shi, Dalin, Shiozaki, Takuhei, Singh, Arvind, Sipler, Rachel E., Sun, Jun, Suzuki, Koji, Takahashi, Kazutaka, Tan, Yehui, Tang, Weiyi, Tremblay, Jean-Éric, Turk-Kubo, Kendra, Wen, Zuozhu, White, Angelicque E., Wilson, Samuel T., Yoshida, Takashi, Zehr, Jonathan P., Zhang, Run, Zhang, Yao, Luo, Ya-Wei
Format: Article in Journal/Newspaper
Language:English
Published: 2023
Subjects:
Online Access:https://orbit.dtu.dk/en/publications/7237ef23-f48f-4301-a99e-f464e27eb71a
https://doi.org/10.5194/essd-15-3673-2023
https://backend.orbit.dtu.dk/ws/files/335256152/essd-15-3673-2023.pdf
id ftdtupubl:oai:pure.atira.dk:publications/7237ef23-f48f-4301-a99e-f464e27eb71a
record_format openpolar
institution Open Polar
collection Technical University of Denmark: DTU Orbit
op_collection_id ftdtupubl
language English
topic /dk/atira/pure/sustainabledevelopmentgoals/life_below_water
name=SDG 14 - Life Below Water
spellingShingle /dk/atira/pure/sustainabledevelopmentgoals/life_below_water
name=SDG 14 - Life Below Water
Shao, Zhibo
Xu, Yangchun
Wang, Hua
Luo, Weicheng
Wang, Lice
Huang, Yuhong
Agawin, Nona Sheila R.
Ahmed, Ayaz
Benavides, Mar
Bentzon-Tilia, Mikkel
Berman-Frank, Ilana
Berthelot, Hugo
Biegala, Isabelle C.
Bif, Mariana B.
Bode, Antonio
Bonnet, Sophie
Bronk, Deborah A.
Brown, Mark V.
Campbell, Lisa
Capone, Douglas G.
Carpenter, Edward J.
Cassar, Nicolas
Chang, Bonnie X.
Chappell, Dreux
Chen, Yuh-ling Lee
Church, Matthew J.
Cornejo-Castillo, Francisco M.
Detoni, Amália Maria Sacilotto
Doney, Scott C.
Dupouy, Cecile
Estrada, Marta
Fernandez, Camila
Fernández-Castro, Bieito
Fonseca-Batista, Debany
Foster, Rachel A.
Furuya, Ken
Garcia, Nicole
Goto, Kanji
Gago, Jesús
Gradoville, Mary R.
Hamersley, M. Robert
Henke, Britt A.
Hörstmann, Cora
Jayakumar, Amal
Jiang, Zhibing
Kao, Shuh-Ji
Karl, David M.
Kittu, Leila R.
Knapp, Angela N.
Kumar, Sanjeev
LaRoche, Julie
Liu, Hongbin
Liu, Jiaxing
Lory, Caroline
Löscher, Carolin R.
Marañón, Emilio
Messer, Lauren F.
Mills, Matthew M.
Mohr, Wiebke
Moisander, Pia H.
Mahaffey, Claire
Moore, Robert
Mouriño-Carballido, Beatriz
Mulholland, Margaret R.
Nakaoka, Shin-ichiro
Needoba, Joseph A.
Raes, Eric J.
Rahav, Eyal
Ramírez-Cárdenas, Teodoro
Reeder, Christian Furbo
Riemann, Lasse
Riou, Virginie
Robidart, Julie C.
Sarma, Vedula V. S. S.
Sato, Takuya
Saxena, Himanshu
Selden, Corday
Seymour, Justin R.
Shi, Dalin
Shiozaki, Takuhei
Singh, Arvind
Sipler, Rachel E.
Sun, Jun
Suzuki, Koji
Takahashi, Kazutaka
Tan, Yehui
Tang, Weiyi
Tremblay, Jean-Éric
Turk-Kubo, Kendra
Wen, Zuozhu
White, Angelicque E.
Wilson, Samuel T.
Yoshida, Takashi
Zehr, Jonathan P.
Zhang, Run
Zhang, Yao
Luo, Ya-Wei
Global oceanic diazotroph database version 2 and elevated estimate of global oceanic N 2 fixation
topic_facet /dk/atira/pure/sustainabledevelopmentgoals/life_below_water
name=SDG 14 - Life Below Water
description Marine diazotrophs convert dinitrogen (N2) gas into bioavailable nitrogen (N), supporting life in the global ocean. In 2012, the first version of the global oceanic diazotroph database (version 1) was published. Here, we present an updated version of the database (version 2), significantly increasing the number of in situ diazotrophic measurements from 13 565 to 55 286. Data points for N 2 fixation rates, diazotrophic cell abundance, and nifH gene copy abundance have increased by 184 %, 86 %, and 809 %, respectively. Version 2 includes two new data sheets for the nifH gene copy abundance of non-cyanobacterial diazotrophs and cell-specific N2 fixation rates. The measurements of N 2 fixation rates approximately follow a log-normal distribution in both version 1 and version 2. However, version 2 considerably extends both the left and right tails of the distribution. Consequently, when estimating global oceanic N 2 fixation rates using the geometric means of different ocean basins, version 1 and version 2 yield similar rates (43–57 versus 45–63 Tg N yr −1 ranges based on one geometric standard error). In contrast, when using arithmetic means, version 2 suggests a significantly higher rate of 223±30 Tg N yr −1 (mean ± standard error; same hereafter) compared to version 1 (74±7 Tg N yr −1 ). Specifically, substantial rate increases are estimated for the South Pacific Ocean (88±23 versus 20±2 Tg N yr −1 ), primarily driven by measurements in the southwestern subtropics, and for the North Atlantic Ocean (40±9 versus 10±2 Tg N yr −1 ). Moreover, version 2 estimates the N 2 fixation rate in the Indian Ocean to be 35±14 Tg N yr −1 , which could not be estimated using version 1 due to limited data availability. Furthermore, a comparison of N 2 fixation rates obtained through different measurement methods at the same months, locations, and depths reveals that the conventional 15N 2 bubble method yields lower rates in 69 % cases compared to the new 15N2 dissolution method. This updated version of the database can facilitate ...
format Article in Journal/Newspaper
author Shao, Zhibo
Xu, Yangchun
Wang, Hua
Luo, Weicheng
Wang, Lice
Huang, Yuhong
Agawin, Nona Sheila R.
Ahmed, Ayaz
Benavides, Mar
Bentzon-Tilia, Mikkel
Berman-Frank, Ilana
Berthelot, Hugo
Biegala, Isabelle C.
Bif, Mariana B.
Bode, Antonio
Bonnet, Sophie
Bronk, Deborah A.
Brown, Mark V.
Campbell, Lisa
Capone, Douglas G.
Carpenter, Edward J.
Cassar, Nicolas
Chang, Bonnie X.
Chappell, Dreux
Chen, Yuh-ling Lee
Church, Matthew J.
Cornejo-Castillo, Francisco M.
Detoni, Amália Maria Sacilotto
Doney, Scott C.
Dupouy, Cecile
Estrada, Marta
Fernandez, Camila
Fernández-Castro, Bieito
Fonseca-Batista, Debany
Foster, Rachel A.
Furuya, Ken
Garcia, Nicole
Goto, Kanji
Gago, Jesús
Gradoville, Mary R.
Hamersley, M. Robert
Henke, Britt A.
Hörstmann, Cora
Jayakumar, Amal
Jiang, Zhibing
Kao, Shuh-Ji
Karl, David M.
Kittu, Leila R.
Knapp, Angela N.
Kumar, Sanjeev
LaRoche, Julie
Liu, Hongbin
Liu, Jiaxing
Lory, Caroline
Löscher, Carolin R.
Marañón, Emilio
Messer, Lauren F.
Mills, Matthew M.
Mohr, Wiebke
Moisander, Pia H.
Mahaffey, Claire
Moore, Robert
Mouriño-Carballido, Beatriz
Mulholland, Margaret R.
Nakaoka, Shin-ichiro
Needoba, Joseph A.
Raes, Eric J.
Rahav, Eyal
Ramírez-Cárdenas, Teodoro
Reeder, Christian Furbo
Riemann, Lasse
Riou, Virginie
Robidart, Julie C.
Sarma, Vedula V. S. S.
Sato, Takuya
Saxena, Himanshu
Selden, Corday
Seymour, Justin R.
Shi, Dalin
Shiozaki, Takuhei
Singh, Arvind
Sipler, Rachel E.
Sun, Jun
Suzuki, Koji
Takahashi, Kazutaka
Tan, Yehui
Tang, Weiyi
Tremblay, Jean-Éric
Turk-Kubo, Kendra
Wen, Zuozhu
White, Angelicque E.
Wilson, Samuel T.
Yoshida, Takashi
Zehr, Jonathan P.
Zhang, Run
Zhang, Yao
Luo, Ya-Wei
author_facet Shao, Zhibo
Xu, Yangchun
Wang, Hua
Luo, Weicheng
Wang, Lice
Huang, Yuhong
Agawin, Nona Sheila R.
Ahmed, Ayaz
Benavides, Mar
Bentzon-Tilia, Mikkel
Berman-Frank, Ilana
Berthelot, Hugo
Biegala, Isabelle C.
Bif, Mariana B.
Bode, Antonio
Bonnet, Sophie
Bronk, Deborah A.
Brown, Mark V.
Campbell, Lisa
Capone, Douglas G.
Carpenter, Edward J.
Cassar, Nicolas
Chang, Bonnie X.
Chappell, Dreux
Chen, Yuh-ling Lee
Church, Matthew J.
Cornejo-Castillo, Francisco M.
Detoni, Amália Maria Sacilotto
Doney, Scott C.
Dupouy, Cecile
Estrada, Marta
Fernandez, Camila
Fernández-Castro, Bieito
Fonseca-Batista, Debany
Foster, Rachel A.
Furuya, Ken
Garcia, Nicole
Goto, Kanji
Gago, Jesús
Gradoville, Mary R.
Hamersley, M. Robert
Henke, Britt A.
Hörstmann, Cora
Jayakumar, Amal
Jiang, Zhibing
Kao, Shuh-Ji
Karl, David M.
Kittu, Leila R.
Knapp, Angela N.
Kumar, Sanjeev
LaRoche, Julie
Liu, Hongbin
Liu, Jiaxing
Lory, Caroline
Löscher, Carolin R.
Marañón, Emilio
Messer, Lauren F.
Mills, Matthew M.
Mohr, Wiebke
Moisander, Pia H.
Mahaffey, Claire
Moore, Robert
Mouriño-Carballido, Beatriz
Mulholland, Margaret R.
Nakaoka, Shin-ichiro
Needoba, Joseph A.
Raes, Eric J.
Rahav, Eyal
Ramírez-Cárdenas, Teodoro
Reeder, Christian Furbo
Riemann, Lasse
Riou, Virginie
Robidart, Julie C.
Sarma, Vedula V. S. S.
Sato, Takuya
Saxena, Himanshu
Selden, Corday
Seymour, Justin R.
Shi, Dalin
Shiozaki, Takuhei
Singh, Arvind
Sipler, Rachel E.
Sun, Jun
Suzuki, Koji
Takahashi, Kazutaka
Tan, Yehui
Tang, Weiyi
Tremblay, Jean-Éric
Turk-Kubo, Kendra
Wen, Zuozhu
White, Angelicque E.
Wilson, Samuel T.
Yoshida, Takashi
Zehr, Jonathan P.
Zhang, Run
Zhang, Yao
Luo, Ya-Wei
author_sort Shao, Zhibo
title Global oceanic diazotroph database version 2 and elevated estimate of global oceanic N 2 fixation
title_short Global oceanic diazotroph database version 2 and elevated estimate of global oceanic N 2 fixation
title_full Global oceanic diazotroph database version 2 and elevated estimate of global oceanic N 2 fixation
title_fullStr Global oceanic diazotroph database version 2 and elevated estimate of global oceanic N 2 fixation
title_full_unstemmed Global oceanic diazotroph database version 2 and elevated estimate of global oceanic N 2 fixation
title_sort global oceanic diazotroph database version 2 and elevated estimate of global oceanic n 2 fixation
publishDate 2023
url https://orbit.dtu.dk/en/publications/7237ef23-f48f-4301-a99e-f464e27eb71a
https://doi.org/10.5194/essd-15-3673-2023
https://backend.orbit.dtu.dk/ws/files/335256152/essd-15-3673-2023.pdf
geographic Indian
Pacific
geographic_facet Indian
Pacific
genre North Atlantic
genre_facet North Atlantic
op_source Shao , Z , Xu , Y , Wang , H , Luo , W , Wang , L , Huang , Y , Agawin , N S R , Ahmed , A , Benavides , M , Bentzon-Tilia , M , Berman-Frank , I , Berthelot , H , Biegala , I C , Bif , M B , Bode , A , Bonnet , S , Bronk , D A , Brown , M V , Campbell , L , Capone , D G , Carpenter , E J , Cassar , N , Chang , B X , Chappell , D , Chen , Y L , Church , M J , Cornejo-Castillo , F M , Detoni , A M S , Doney , S C , Dupouy , C , Estrada , M , Fernandez , C , Fernández-Castro , B , Fonseca-Batista , D , Foster , R A , Furuya , K , Garcia , N , Goto , K , Gago , J , Gradoville , M R , Hamersley , M R , Henke , B A , Hörstmann , C , Jayakumar , A , Jiang , Z , Kao , S-J , Karl , D M , Kittu , L R , Knapp , A N , Kumar , S , LaRoche , J , Liu , H , Liu , J , Lory , C , Löscher , C R , Marañón , E , Messer , L F , Mills , M M , Mohr , W , Moisander , P H , Mahaffey , C , Moore , R , Mouriño-Carballido , B , Mulholland , M R , Nakaoka , S , Needoba , J A , Raes , E J , Rahav , E , Ramírez-Cárdenas , T , Reeder , C F , Riemann , L , Riou , V , Robidart , J C , Sarma , V V S S , Sato , T , Saxena , H , Selden , C , Seymour , J R , Shi , D , Shiozaki , T , Singh , A , Sipler , R E , Sun , J , Suzuki , K , Takahashi , K , Tan , Y , Tang , W , Tremblay , J-É , Turk-Kubo , K , Wen , Z , White , A E , Wilson , S T , Yoshida , T , Zehr , J P , Zhang , R , Zhang , Y & Luo , Y-W 2023 , ' Global oceanic diazotroph database version 2 and elevated estimate of global oceanic N 2 fixation ' , Earth System Science Data , vol. 15 , no. 8 , pp. 3673-3709 . https://doi.org/10.5194/essd-15-3673-2023
op_relation https://orbit.dtu.dk/en/publications/7237ef23-f48f-4301-a99e-f464e27eb71a
op_rights info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.5194/essd-15-3673-2023
container_title Earth System Science Data
container_volume 15
container_issue 8
container_start_page 3673
op_container_end_page 3709
_version_ 1809929122919481344
spelling ftdtupubl:oai:pure.atira.dk:publications/7237ef23-f48f-4301-a99e-f464e27eb71a 2024-09-09T19:58:09+00:00 Global oceanic diazotroph database version 2 and elevated estimate of global oceanic N 2 fixation Shao, Zhibo Xu, Yangchun Wang, Hua Luo, Weicheng Wang, Lice Huang, Yuhong Agawin, Nona Sheila R. Ahmed, Ayaz Benavides, Mar Bentzon-Tilia, Mikkel Berman-Frank, Ilana Berthelot, Hugo Biegala, Isabelle C. Bif, Mariana B. Bode, Antonio Bonnet, Sophie Bronk, Deborah A. Brown, Mark V. Campbell, Lisa Capone, Douglas G. Carpenter, Edward J. Cassar, Nicolas Chang, Bonnie X. Chappell, Dreux Chen, Yuh-ling Lee Church, Matthew J. Cornejo-Castillo, Francisco M. Detoni, Amália Maria Sacilotto Doney, Scott C. Dupouy, Cecile Estrada, Marta Fernandez, Camila Fernández-Castro, Bieito Fonseca-Batista, Debany Foster, Rachel A. Furuya, Ken Garcia, Nicole Goto, Kanji Gago, Jesús Gradoville, Mary R. Hamersley, M. Robert Henke, Britt A. Hörstmann, Cora Jayakumar, Amal Jiang, Zhibing Kao, Shuh-Ji Karl, David M. Kittu, Leila R. Knapp, Angela N. Kumar, Sanjeev LaRoche, Julie Liu, Hongbin Liu, Jiaxing Lory, Caroline Löscher, Carolin R. Marañón, Emilio Messer, Lauren F. Mills, Matthew M. Mohr, Wiebke Moisander, Pia H. Mahaffey, Claire Moore, Robert Mouriño-Carballido, Beatriz Mulholland, Margaret R. Nakaoka, Shin-ichiro Needoba, Joseph A. Raes, Eric J. Rahav, Eyal Ramírez-Cárdenas, Teodoro Reeder, Christian Furbo Riemann, Lasse Riou, Virginie Robidart, Julie C. Sarma, Vedula V. S. S. Sato, Takuya Saxena, Himanshu Selden, Corday Seymour, Justin R. Shi, Dalin Shiozaki, Takuhei Singh, Arvind Sipler, Rachel E. Sun, Jun Suzuki, Koji Takahashi, Kazutaka Tan, Yehui Tang, Weiyi Tremblay, Jean-Éric Turk-Kubo, Kendra Wen, Zuozhu White, Angelicque E. Wilson, Samuel T. Yoshida, Takashi Zehr, Jonathan P. Zhang, Run Zhang, Yao Luo, Ya-Wei 2023 application/pdf https://orbit.dtu.dk/en/publications/7237ef23-f48f-4301-a99e-f464e27eb71a https://doi.org/10.5194/essd-15-3673-2023 https://backend.orbit.dtu.dk/ws/files/335256152/essd-15-3673-2023.pdf eng eng https://orbit.dtu.dk/en/publications/7237ef23-f48f-4301-a99e-f464e27eb71a info:eu-repo/semantics/openAccess Shao , Z , Xu , Y , Wang , H , Luo , W , Wang , L , Huang , Y , Agawin , N S R , Ahmed , A , Benavides , M , Bentzon-Tilia , M , Berman-Frank , I , Berthelot , H , Biegala , I C , Bif , M B , Bode , A , Bonnet , S , Bronk , D A , Brown , M V , Campbell , L , Capone , D G , Carpenter , E J , Cassar , N , Chang , B X , Chappell , D , Chen , Y L , Church , M J , Cornejo-Castillo , F M , Detoni , A M S , Doney , S C , Dupouy , C , Estrada , M , Fernandez , C , Fernández-Castro , B , Fonseca-Batista , D , Foster , R A , Furuya , K , Garcia , N , Goto , K , Gago , J , Gradoville , M R , Hamersley , M R , Henke , B A , Hörstmann , C , Jayakumar , A , Jiang , Z , Kao , S-J , Karl , D M , Kittu , L R , Knapp , A N , Kumar , S , LaRoche , J , Liu , H , Liu , J , Lory , C , Löscher , C R , Marañón , E , Messer , L F , Mills , M M , Mohr , W , Moisander , P H , Mahaffey , C , Moore , R , Mouriño-Carballido , B , Mulholland , M R , Nakaoka , S , Needoba , J A , Raes , E J , Rahav , E , Ramírez-Cárdenas , T , Reeder , C F , Riemann , L , Riou , V , Robidart , J C , Sarma , V V S S , Sato , T , Saxena , H , Selden , C , Seymour , J R , Shi , D , Shiozaki , T , Singh , A , Sipler , R E , Sun , J , Suzuki , K , Takahashi , K , Tan , Y , Tang , W , Tremblay , J-É , Turk-Kubo , K , Wen , Z , White , A E , Wilson , S T , Yoshida , T , Zehr , J P , Zhang , R , Zhang , Y & Luo , Y-W 2023 , ' Global oceanic diazotroph database version 2 and elevated estimate of global oceanic N 2 fixation ' , Earth System Science Data , vol. 15 , no. 8 , pp. 3673-3709 . https://doi.org/10.5194/essd-15-3673-2023 /dk/atira/pure/sustainabledevelopmentgoals/life_below_water name=SDG 14 - Life Below Water article 2023 ftdtupubl https://doi.org/10.5194/essd-15-3673-2023 2024-08-13T00:03:07Z Marine diazotrophs convert dinitrogen (N2) gas into bioavailable nitrogen (N), supporting life in the global ocean. In 2012, the first version of the global oceanic diazotroph database (version 1) was published. Here, we present an updated version of the database (version 2), significantly increasing the number of in situ diazotrophic measurements from 13 565 to 55 286. Data points for N 2 fixation rates, diazotrophic cell abundance, and nifH gene copy abundance have increased by 184 %, 86 %, and 809 %, respectively. Version 2 includes two new data sheets for the nifH gene copy abundance of non-cyanobacterial diazotrophs and cell-specific N2 fixation rates. The measurements of N 2 fixation rates approximately follow a log-normal distribution in both version 1 and version 2. However, version 2 considerably extends both the left and right tails of the distribution. Consequently, when estimating global oceanic N 2 fixation rates using the geometric means of different ocean basins, version 1 and version 2 yield similar rates (43–57 versus 45–63 Tg N yr −1 ranges based on one geometric standard error). In contrast, when using arithmetic means, version 2 suggests a significantly higher rate of 223±30 Tg N yr −1 (mean ± standard error; same hereafter) compared to version 1 (74±7 Tg N yr −1 ). Specifically, substantial rate increases are estimated for the South Pacific Ocean (88±23 versus 20±2 Tg N yr −1 ), primarily driven by measurements in the southwestern subtropics, and for the North Atlantic Ocean (40±9 versus 10±2 Tg N yr −1 ). Moreover, version 2 estimates the N 2 fixation rate in the Indian Ocean to be 35±14 Tg N yr −1 , which could not be estimated using version 1 due to limited data availability. Furthermore, a comparison of N 2 fixation rates obtained through different measurement methods at the same months, locations, and depths reveals that the conventional 15N 2 bubble method yields lower rates in 69 % cases compared to the new 15N2 dissolution method. This updated version of the database can facilitate ... Article in Journal/Newspaper North Atlantic Technical University of Denmark: DTU Orbit Indian Pacific Earth System Science Data 15 8 3673 3709