Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus
Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of...
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ftdryad:oai:v1.datadryad.org:10255/dryad.97859 2023-05-15T18:04:04+02:00 Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. Russia 2015-09-17T14:40:16Z http://hdl.handle.net/10255/dryad.97859 https://doi.org/10.5061/dryad.29fp0 unknown doi:10.5061/dryad.29fp0/1 doi:10.1093/jhered/esv081 PMID:26447215 doi:10.5061/dryad.29fp0 Kharzinova VR, Sermyagin AA, Gladyr EA, Okhlopkov IM, Brem G, Zinovieva NA (2015) A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus. Journal of Heredity 106(6): 758-761. http://hdl.handle.net/10255/dryad.97859 whole genome analysis SNP reindeer Conservation genetics and biodiversity Article 2015 ftdryad https://doi.org/10.5061/dryad.29fp0 https://doi.org/10.5061/dryad.29fp0/1 https://doi.org/10.1093/jhered/esv081 2020-01-01T15:25:00Z Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of Ovine SNPs could be genotyped, while only 5.3% and 2.03% of them were respectively polymorphic. The scored and the polymorphic SNPs were identified on each bovine and each ovine chromosome, but their distribution was not unique. The maximal value of runs of homozygosity (ROH) was 30.93Mb (for SNPs corresponding to bovine chromosome 8) and 80.32Mb (for SNPs corresponding to ovine chromosome 7). Thus, the SNP chips developed for bovine and ovine species can be used as a powerful tool for genome analysis in reindeer R. tarandus. Article in Journal/Newspaper Rangifer Rangifer tarandus Dryad Digital Repository (Duke University) |
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Open Polar |
collection |
Dryad Digital Repository (Duke University) |
op_collection_id |
ftdryad |
language |
unknown |
topic |
whole genome analysis SNP reindeer Conservation genetics and biodiversity |
spellingShingle |
whole genome analysis SNP reindeer Conservation genetics and biodiversity Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
topic_facet |
whole genome analysis SNP reindeer Conservation genetics and biodiversity |
description |
Two sets of commercially available single nucleotide polymorphisms (SNPs) developed for cattle (BovineSNP50 BeadChip) and sheep (OvineSNP50 BeadChip) have been trialed for whole-genome analysis of 4 female samples of Rangifer tarandus inhabiting Russia. We found out that 43.0% of bovine and 47.0% of Ovine SNPs could be genotyped, while only 5.3% and 2.03% of them were respectively polymorphic. The scored and the polymorphic SNPs were identified on each bovine and each ovine chromosome, but their distribution was not unique. The maximal value of runs of homozygosity (ROH) was 30.93Mb (for SNPs corresponding to bovine chromosome 8) and 80.32Mb (for SNPs corresponding to ovine chromosome 7). Thus, the SNP chips developed for bovine and ovine species can be used as a powerful tool for genome analysis in reindeer R. tarandus. |
format |
Article in Journal/Newspaper |
author |
Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. |
author_facet |
Kharzinova, Veronika R. Sermyagin, Alexander A. Gladyr, Elena A. Okhlopkov, Innokentiy M. Brem, Gottfried Zinovieva, Natalia A. |
author_sort |
Kharzinova, Veronika R. |
title |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_short |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_full |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_fullStr |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_full_unstemmed |
Data from: A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus |
title_sort |
data from: a study of applicability of snp chips developed for bovine and ovine species to whole-genome analysis of reindeer rangifer tarandus |
publishDate |
2015 |
url |
http://hdl.handle.net/10255/dryad.97859 https://doi.org/10.5061/dryad.29fp0 |
op_coverage |
Russia |
genre |
Rangifer Rangifer tarandus |
genre_facet |
Rangifer Rangifer tarandus |
op_relation |
doi:10.5061/dryad.29fp0/1 doi:10.1093/jhered/esv081 PMID:26447215 doi:10.5061/dryad.29fp0 Kharzinova VR, Sermyagin AA, Gladyr EA, Okhlopkov IM, Brem G, Zinovieva NA (2015) A study of applicability of SNP chips developed for bovine and ovine species to whole-genome analysis of reindeer Rangifer tarandus. Journal of Heredity 106(6): 758-761. http://hdl.handle.net/10255/dryad.97859 |
op_doi |
https://doi.org/10.5061/dryad.29fp0 https://doi.org/10.5061/dryad.29fp0/1 https://doi.org/10.1093/jhered/esv081 |
_version_ |
1766175339718901760 |