Table S7 (Excel): Genes responding to heat stress.
Genes that responded to acute heat stress (time points 2 and 3) are represented for samples from all four populations in Tab. S7a, for Doverodde samples Tab. S7c, for Gabicce Mare samples in Tab. S7d, and for Waquoit samples in Tab. S7e. Genes that responded to heat in the recovery phase (time point...
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ftdryad:oai:v1.datadryad.org:10255/dryad.97444 2023-05-15T17:35:00+02:00 Table S7 (Excel): Genes responding to heat stress. Jueterbock, Alexander Franssen, Susanne U. Bergmann, Nina Gu, Jenny Coyer, James A. Reusch, Thorsten B.H. Bornberg-Bauer, Erich Olsen, Jeanine L. North Atlantic 2016-08-29T14:25:49Z 4072999 http://hdl.handle.net/10255/dryad.97444 https://doi.org/10.5061/dryad.vf5fk/7 unknown doi:10.5061/dryad.vf5fk doi:10.5061/dryad.vf5fk/7 http://hdl.handle.net/10255/dryad.97444 http://creativecommons.org/publicdomain/zero/1.0/ CC0 PDM RNAseq Heatwave Global warming Transcriptomics Common-garden experiment Differential expression Dataset 2016 ftdryad https://doi.org/10.5061/dryad.vf5fk/7 https://doi.org/10.5061/dryad.vf5fk 2020-01-01T15:24:49Z Genes that responded to acute heat stress (time points 2 and 3) are represented for samples from all four populations in Tab. S7a, for Doverodde samples Tab. S7c, for Gabicce Mare samples in Tab. S7d, and for Waquoit samples in Tab. S7e. Genes that responded to heat in the recovery phase (time points 5, 7, and 9) are represented for all samples in Tab. S7b, for Doverodde samples Tab. S7f, for Gabicce Mare samples in Tab. S7g, for Great Bay samples in Tab. S7h, and for Waquoit samples in Tab. S7i. ZosmaID (column A): the gene ID based on the Zostera marina genome annotation v2.1 (GenBank Accession: LFYR00000000); mRNAID (column B): the mapped sequence ID; Source (column C): the source of annotation (inference from homology or top BLAST hit); Description (column D): the gene description; baseMean (column E): the mean of normalized counts for all samples; log2FoldChange (column F): the log2 fold change in normalized expression between all control samples and all stressed samples; lfcSE (column G): the standard error of the log2 fold change; stat (column H): the Wald test statistic for differential expression; pvalue (column I): the p-value; padj (column J): the p-value adjusted by the Benjamini-Hochberg method to control for false discovery rate; sdcol(column K), the standard deviation of expression counts that were normalized by size factors for all samples. The following columns represent regularized log-transformed expression values of all libraries that were included in the test. Dataset North Atlantic Dryad Digital Repository (Duke University) |
institution |
Open Polar |
collection |
Dryad Digital Repository (Duke University) |
op_collection_id |
ftdryad |
language |
unknown |
topic |
RNAseq Heatwave Global warming Transcriptomics Common-garden experiment Differential expression |
spellingShingle |
RNAseq Heatwave Global warming Transcriptomics Common-garden experiment Differential expression Jueterbock, Alexander Franssen, Susanne U. Bergmann, Nina Gu, Jenny Coyer, James A. Reusch, Thorsten B.H. Bornberg-Bauer, Erich Olsen, Jeanine L. Table S7 (Excel): Genes responding to heat stress. |
topic_facet |
RNAseq Heatwave Global warming Transcriptomics Common-garden experiment Differential expression |
description |
Genes that responded to acute heat stress (time points 2 and 3) are represented for samples from all four populations in Tab. S7a, for Doverodde samples Tab. S7c, for Gabicce Mare samples in Tab. S7d, and for Waquoit samples in Tab. S7e. Genes that responded to heat in the recovery phase (time points 5, 7, and 9) are represented for all samples in Tab. S7b, for Doverodde samples Tab. S7f, for Gabicce Mare samples in Tab. S7g, for Great Bay samples in Tab. S7h, and for Waquoit samples in Tab. S7i. ZosmaID (column A): the gene ID based on the Zostera marina genome annotation v2.1 (GenBank Accession: LFYR00000000); mRNAID (column B): the mapped sequence ID; Source (column C): the source of annotation (inference from homology or top BLAST hit); Description (column D): the gene description; baseMean (column E): the mean of normalized counts for all samples; log2FoldChange (column F): the log2 fold change in normalized expression between all control samples and all stressed samples; lfcSE (column G): the standard error of the log2 fold change; stat (column H): the Wald test statistic for differential expression; pvalue (column I): the p-value; padj (column J): the p-value adjusted by the Benjamini-Hochberg method to control for false discovery rate; sdcol(column K), the standard deviation of expression counts that were normalized by size factors for all samples. The following columns represent regularized log-transformed expression values of all libraries that were included in the test. |
format |
Dataset |
author |
Jueterbock, Alexander Franssen, Susanne U. Bergmann, Nina Gu, Jenny Coyer, James A. Reusch, Thorsten B.H. Bornberg-Bauer, Erich Olsen, Jeanine L. |
author_facet |
Jueterbock, Alexander Franssen, Susanne U. Bergmann, Nina Gu, Jenny Coyer, James A. Reusch, Thorsten B.H. Bornberg-Bauer, Erich Olsen, Jeanine L. |
author_sort |
Jueterbock, Alexander |
title |
Table S7 (Excel): Genes responding to heat stress. |
title_short |
Table S7 (Excel): Genes responding to heat stress. |
title_full |
Table S7 (Excel): Genes responding to heat stress. |
title_fullStr |
Table S7 (Excel): Genes responding to heat stress. |
title_full_unstemmed |
Table S7 (Excel): Genes responding to heat stress. |
title_sort |
table s7 (excel): genes responding to heat stress. |
publishDate |
2016 |
url |
http://hdl.handle.net/10255/dryad.97444 https://doi.org/10.5061/dryad.vf5fk/7 |
op_coverage |
North Atlantic |
genre |
North Atlantic |
genre_facet |
North Atlantic |
op_relation |
doi:10.5061/dryad.vf5fk doi:10.5061/dryad.vf5fk/7 http://hdl.handle.net/10255/dryad.97444 |
op_rights |
http://creativecommons.org/publicdomain/zero/1.0/ |
op_rightsnorm |
CC0 PDM |
op_doi |
https://doi.org/10.5061/dryad.vf5fk/7 https://doi.org/10.5061/dryad.vf5fk |
_version_ |
1766134006457303040 |