Data from: Implications of the circumpolar genetic structure of polar bears for their conservation in a rapidly warming Arctic

We provide an expansive analysis of polar bear (Ursus maritimus) circumpolar genetic variation during the last two decades of decline in their sea-ice habitat. We sought to evaluate whether their genetic diversity and structure have changed over this period of habitat decline, how their current gene...

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Main Authors: Peacock, Elizabeth, Sonsthagen, Sarah A., Obbard, Martyn E., Boltunov, Andrei, Regehr, Eric V., Ovsyanikov, Nikita, Aars, Jon, Atkinson, Stephen N., Sage, George K., Hope, Andrew G., Zeyl, Eve, Bachmann, Lutz, Ehrich, Dorothee, Scribner, Kim T., Amstrup, Steven C., Belikov, Stanislav, Born, Erik W., Derocher, Andrew E., Stirling, Ian, Taylor, Mitchell K., Wiig, Øystein, Paetkau, David, Talbot, Sandra L.
Format: Article in Journal/Newspaper
Language:unknown
Published: 2015
Subjects:
Online Access:http://hdl.handle.net/10255/dryad.71925
https://doi.org/10.5061/dryad.v2j1r
id ftdryad:oai:v1.datadryad.org:10255/dryad.71925
record_format openpolar
institution Open Polar
collection Dryad Digital Repository (Duke University)
op_collection_id ftdryad
language unknown
topic Arctic
polar bear
population genetics
mitochondrial DNA
hybridization
phylogeography
phylogenetics
climate change
conservation
spellingShingle Arctic
polar bear
population genetics
mitochondrial DNA
hybridization
phylogeography
phylogenetics
climate change
conservation
Peacock, Elizabeth
Sonsthagen, Sarah A.
Obbard, Martyn E.
Boltunov, Andrei
Regehr, Eric V.
Ovsyanikov, Nikita
Aars, Jon
Atkinson, Stephen N.
Sage, George K.
Hope, Andrew G.
Zeyl, Eve
Bachmann, Lutz
Ehrich, Dorothee
Scribner, Kim T.
Amstrup, Steven C.
Belikov, Stanislav
Born, Erik W.
Derocher, Andrew E.
Stirling, Ian
Taylor, Mitchell K.
Wiig, Øystein
Paetkau, David
Talbot, Sandra L.
Data from: Implications of the circumpolar genetic structure of polar bears for their conservation in a rapidly warming Arctic
topic_facet Arctic
polar bear
population genetics
mitochondrial DNA
hybridization
phylogeography
phylogenetics
climate change
conservation
description We provide an expansive analysis of polar bear (Ursus maritimus) circumpolar genetic variation during the last two decades of decline in their sea-ice habitat. We sought to evaluate whether their genetic diversity and structure have changed over this period of habitat decline, how their current genetic patterns compare with past patterns, and how genetic demography changed with ancient fluctuations in climate. Characterizing their circumpolar genetic structure using microsatellite data, we defined four clusters that largely correspond to current ecological and oceanographic factors: Eastern Polar Basin, Western Polar Basin, Canadian Archipelago and Southern Canada. We document evidence for recent (ca. last 1–3 generations) directional gene flow from Southern Canada and the Eastern Polar Basin towards the Canadian Archipelago, an area hypothesized to be a future refugium for polar bears as climate-induced habitat decline continues. Our data provide empirical evidence in support of this hypothesis. The direction of current gene flow differs from earlier patterns of gene flow in the Holocene. From analyses of mitochondrial DNA, the Canadian Archipelago cluster and the Barents Sea subpopulation within the Eastern Polar Basin cluster did not show signals of population expansion, suggesting these areas may have served also as past interglacial refugia. Mismatch analyses of mitochondrial DNA data from polar and the paraphyletic brown bear (U. arctos) uncovered offset signals in timing of population expansion between the two species, that are attributed to differential demographic responses to past climate cycling. Mitogenomic structure of polar bears was shallow and developed recently, in contrast to the multiple clades of brown bears. We found no genetic signatures of recent hybridization between the species in our large, circumpolar sample, suggesting that recently observed hybrids represent localized events. Documenting changes in subpopulation connectivity will allow polar nations to proactively adjust conservation actions to continuing decline in sea-ice habitat.
format Article in Journal/Newspaper
author Peacock, Elizabeth
Sonsthagen, Sarah A.
Obbard, Martyn E.
Boltunov, Andrei
Regehr, Eric V.
Ovsyanikov, Nikita
Aars, Jon
Atkinson, Stephen N.
Sage, George K.
Hope, Andrew G.
Zeyl, Eve
Bachmann, Lutz
Ehrich, Dorothee
Scribner, Kim T.
Amstrup, Steven C.
Belikov, Stanislav
Born, Erik W.
Derocher, Andrew E.
Stirling, Ian
Taylor, Mitchell K.
Wiig, Øystein
Paetkau, David
Talbot, Sandra L.
author_facet Peacock, Elizabeth
Sonsthagen, Sarah A.
Obbard, Martyn E.
Boltunov, Andrei
Regehr, Eric V.
Ovsyanikov, Nikita
Aars, Jon
Atkinson, Stephen N.
Sage, George K.
Hope, Andrew G.
Zeyl, Eve
Bachmann, Lutz
Ehrich, Dorothee
Scribner, Kim T.
Amstrup, Steven C.
Belikov, Stanislav
Born, Erik W.
Derocher, Andrew E.
Stirling, Ian
Taylor, Mitchell K.
Wiig, Øystein
Paetkau, David
Talbot, Sandra L.
author_sort Peacock, Elizabeth
title Data from: Implications of the circumpolar genetic structure of polar bears for their conservation in a rapidly warming Arctic
title_short Data from: Implications of the circumpolar genetic structure of polar bears for their conservation in a rapidly warming Arctic
title_full Data from: Implications of the circumpolar genetic structure of polar bears for their conservation in a rapidly warming Arctic
title_fullStr Data from: Implications of the circumpolar genetic structure of polar bears for their conservation in a rapidly warming Arctic
title_full_unstemmed Data from: Implications of the circumpolar genetic structure of polar bears for their conservation in a rapidly warming Arctic
title_sort data from: implications of the circumpolar genetic structure of polar bears for their conservation in a rapidly warming arctic
publishDate 2015
url http://hdl.handle.net/10255/dryad.71925
https://doi.org/10.5061/dryad.v2j1r
op_coverage Barents Sea
Western Hudson Bay
Southern Hudson Bay
Davis Strait
Kara Sea
Laptev Sea
Southern Beaufort Sea
Northern Beaufort Sea
Foxe Basin
Baffin Bay
Norwegian Bay
M'Clintock Channel
Gulf of Boothia
Viscount Melville
Chukchi Sea
Kane Basin
Lancaster Sound
East Greenland
Holocene
Pleistocene
long_lat ENVELOPE(-77.918,-77.918,65.931,65.931)
ENVELOPE(-90.657,-90.657,70.719,70.719)
ENVELOPE(-63.038,-63.038,-73.952,-73.952)
ENVELOPE(-83.999,-83.999,74.218,74.218)
ENVELOPE(-94.214,-94.214,57.802,57.802)
ENVELOPE(-102.002,-102.002,72.001,72.001)
ENVELOPE(-91.535,-91.535,77.584,77.584)
geographic Arctic
Baffin Bay
Barents Sea
Canada
Chukchi Sea
Foxe Basin
Greenland
Gulf of Boothia
Hudson
Hudson Bay
Kane
Kara Sea
Lancaster Sound
Laptev Sea
M'Clintock
M'Clintock Channel
Norwegian Bay
geographic_facet Arctic
Baffin Bay
Barents Sea
Canada
Chukchi Sea
Foxe Basin
Greenland
Gulf of Boothia
Hudson
Hudson Bay
Kane
Kara Sea
Lancaster Sound
Laptev Sea
M'Clintock
M'Clintock Channel
Norwegian Bay
genre Arctic
Arctic
Baffin Bay
Baffin Bay
Baffin
Barents Sea
Beaufort Sea
brown bear
Canadian Archipelago
Chukchi
Chukchi Sea
Climate change
Davis Strait
East Greenland
Foxe Basin
Greenland
Hudson Bay
Kane Basin
Kara Sea
Lancaster Sound
laptev
Laptev Sea
Norwegian Bay
Norwegian Bay
Sea ice
Ursus maritimus
genre_facet Arctic
Arctic
Baffin Bay
Baffin Bay
Baffin
Barents Sea
Beaufort Sea
brown bear
Canadian Archipelago
Chukchi
Chukchi Sea
Climate change
Davis Strait
East Greenland
Foxe Basin
Greenland
Hudson Bay
Kane Basin
Kara Sea
Lancaster Sound
laptev
Laptev Sea
Norwegian Bay
Norwegian Bay
Sea ice
Ursus maritimus
op_relation doi:10.5061/dryad.v2j1r/1
doi:10.1371/journal.pone.0112021
PMID:25562525
doi:10.5061/dryad.v2j1r
Peacock E, Sonsthagen SA, Obbard ME, Boltunov A, Regehr EV, Ovsyanikov N, Aars J, Atkinson SN, Sage GK, Hope AG, Zeyl E, Bachmann L, Ehrich D, Scribner KT, Amstrup SC, Belikov S, Born EW, Derocher AE, Stirling I, Taylor MK, Wiig Ø, Paetkau D, Talbot SL (2015) Implications of the circumpolar genetic structure of polar bears for their conservation in a rapidly warming Arctic. PLOS ONE 10(1): e112021.
http://hdl.handle.net/10255/dryad.71925
op_doi https://doi.org/10.5061/dryad.v2j1r
https://doi.org/10.5061/dryad.v2j1r/1
https://doi.org/10.1371/journal.pone.0112021
_version_ 1766301519484813312
spelling ftdryad:oai:v1.datadryad.org:10255/dryad.71925 2023-05-15T14:27:40+02:00 Data from: Implications of the circumpolar genetic structure of polar bears for their conservation in a rapidly warming Arctic Peacock, Elizabeth Sonsthagen, Sarah A. Obbard, Martyn E. Boltunov, Andrei Regehr, Eric V. Ovsyanikov, Nikita Aars, Jon Atkinson, Stephen N. Sage, George K. Hope, Andrew G. Zeyl, Eve Bachmann, Lutz Ehrich, Dorothee Scribner, Kim T. Amstrup, Steven C. Belikov, Stanislav Born, Erik W. Derocher, Andrew E. Stirling, Ian Taylor, Mitchell K. Wiig, Øystein Paetkau, David Talbot, Sandra L. Barents Sea Western Hudson Bay Southern Hudson Bay Davis Strait Kara Sea Laptev Sea Southern Beaufort Sea Northern Beaufort Sea Foxe Basin Baffin Bay Norwegian Bay M'Clintock Channel Gulf of Boothia Viscount Melville Chukchi Sea Kane Basin Lancaster Sound East Greenland Holocene Pleistocene 2015-02-03T16:32:19Z http://hdl.handle.net/10255/dryad.71925 https://doi.org/10.5061/dryad.v2j1r unknown doi:10.5061/dryad.v2j1r/1 doi:10.1371/journal.pone.0112021 PMID:25562525 doi:10.5061/dryad.v2j1r Peacock E, Sonsthagen SA, Obbard ME, Boltunov A, Regehr EV, Ovsyanikov N, Aars J, Atkinson SN, Sage GK, Hope AG, Zeyl E, Bachmann L, Ehrich D, Scribner KT, Amstrup SC, Belikov S, Born EW, Derocher AE, Stirling I, Taylor MK, Wiig Ø, Paetkau D, Talbot SL (2015) Implications of the circumpolar genetic structure of polar bears for their conservation in a rapidly warming Arctic. PLOS ONE 10(1): e112021. http://hdl.handle.net/10255/dryad.71925 Arctic polar bear population genetics mitochondrial DNA hybridization phylogeography phylogenetics climate change conservation Article 2015 ftdryad https://doi.org/10.5061/dryad.v2j1r https://doi.org/10.5061/dryad.v2j1r/1 https://doi.org/10.1371/journal.pone.0112021 2020-01-01T15:12:19Z We provide an expansive analysis of polar bear (Ursus maritimus) circumpolar genetic variation during the last two decades of decline in their sea-ice habitat. We sought to evaluate whether their genetic diversity and structure have changed over this period of habitat decline, how their current genetic patterns compare with past patterns, and how genetic demography changed with ancient fluctuations in climate. Characterizing their circumpolar genetic structure using microsatellite data, we defined four clusters that largely correspond to current ecological and oceanographic factors: Eastern Polar Basin, Western Polar Basin, Canadian Archipelago and Southern Canada. We document evidence for recent (ca. last 1–3 generations) directional gene flow from Southern Canada and the Eastern Polar Basin towards the Canadian Archipelago, an area hypothesized to be a future refugium for polar bears as climate-induced habitat decline continues. Our data provide empirical evidence in support of this hypothesis. The direction of current gene flow differs from earlier patterns of gene flow in the Holocene. From analyses of mitochondrial DNA, the Canadian Archipelago cluster and the Barents Sea subpopulation within the Eastern Polar Basin cluster did not show signals of population expansion, suggesting these areas may have served also as past interglacial refugia. Mismatch analyses of mitochondrial DNA data from polar and the paraphyletic brown bear (U. arctos) uncovered offset signals in timing of population expansion between the two species, that are attributed to differential demographic responses to past climate cycling. Mitogenomic structure of polar bears was shallow and developed recently, in contrast to the multiple clades of brown bears. We found no genetic signatures of recent hybridization between the species in our large, circumpolar sample, suggesting that recently observed hybrids represent localized events. Documenting changes in subpopulation connectivity will allow polar nations to proactively adjust conservation actions to continuing decline in sea-ice habitat. Article in Journal/Newspaper Arctic Arctic Baffin Bay Baffin Bay Baffin Barents Sea Beaufort Sea brown bear Canadian Archipelago Chukchi Chukchi Sea Climate change Davis Strait East Greenland Foxe Basin Greenland Hudson Bay Kane Basin Kara Sea Lancaster Sound laptev Laptev Sea Norwegian Bay Norwegian Bay Sea ice Ursus maritimus Dryad Digital Repository (Duke University) Arctic Baffin Bay Barents Sea Canada Chukchi Sea Foxe Basin ENVELOPE(-77.918,-77.918,65.931,65.931) Greenland Gulf of Boothia ENVELOPE(-90.657,-90.657,70.719,70.719) Hudson Hudson Bay Kane ENVELOPE(-63.038,-63.038,-73.952,-73.952) Kara Sea Lancaster Sound ENVELOPE(-83.999,-83.999,74.218,74.218) Laptev Sea M'Clintock ENVELOPE(-94.214,-94.214,57.802,57.802) M'Clintock Channel ENVELOPE(-102.002,-102.002,72.001,72.001) Norwegian Bay ENVELOPE(-91.535,-91.535,77.584,77.584)