Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification
Copepods of the genus Calanus are key zooplankton species in temperate to arctic marine ecosystems. Despite their ecological importance, species identification remains challenging. Furthermore, the recent report of hybrids among Calanus species highlights the need for diagnostic nuclear markers in o...
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ftdryad:oai:v1.datadryad.org:10255/dryad.59157 2023-05-15T14:52:49+02:00 Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification Smolina, Irina Kollias, Spyros Poortvliet, Marloes Nielsen, Torkel Lindeque, Penelope Castellani, Claudia Møller, Eva Blanco-Bercial, Leocadio Hoarau, Galice North Atlantic Arctic Ocean 2014-02-20T19:01:12Z http://hdl.handle.net/10255/dryad.59157 https://doi.org/10.5061/dryad.n8f30 unknown doi:10.5061/dryad.n8f30/1 doi:10.5061/dryad.n8f30/2 doi:10.5061/dryad.n8f30/3 doi:10.5061/dryad.n8f30/4 doi:10.5061/dryad.n8f30/5 doi:10.1111/1755-0998.12241 PMID:24612683 doi:10.5061/dryad.n8f30 Smolina I, Kollias S, Poortvliet M, Nielsen T, Lindeque P, Castellani C, Møller E, Blanco-Bercial L, Hoarau G (2014) Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification. Molecular Ecology Resources 14(5): 1072-1079. http://hdl.handle.net/10255/dryad.59157 Bioinfomatics Climate Change Hybridization Systematics Transcriptomics Crustaceans Phyloinfomatics Article 2014 ftdryad https://doi.org/10.5061/dryad.n8f30 https://doi.org/10.5061/dryad.n8f30/1 https://doi.org/10.5061/dryad.n8f30/2 https://doi.org/10.5061/dryad.n8f30/3 https://doi.org/10.5061/dryad.n8f30/4 https://doi.org/10.5061/dryad.n8f30/5 https://doi.org/1 2020-01-01T15:06:17Z Copepods of the genus Calanus are key zooplankton species in temperate to arctic marine ecosystems. Despite their ecological importance, species identification remains challenging. Furthermore, the recent report of hybrids among Calanus species highlights the need for diagnostic nuclear markers in order to efficiently identify parental species and hybrids. Using Next Generation Sequencing analysis of both the genome and transcriptome from two sibling species, C. finmarchichus and C. glacialis, we developed a panel of 12 nuclear insertion/deletion markers. All the markers showed species specific amplicon length. Furthermore most of the markers were successfully amplified in other Calanus species allowing the molecular identification of C. helgolandicus, C hyperboreus and C. marshallae. Article in Journal/Newspaper Arctic Arctic Ocean Atlantic Arctic Atlantic-Arctic Climate change North Atlantic Zooplankton Copepods Dryad Digital Repository (Duke University) Arctic Arctic Ocean |
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Open Polar |
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Dryad Digital Repository (Duke University) |
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ftdryad |
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unknown |
topic |
Bioinfomatics Climate Change Hybridization Systematics Transcriptomics Crustaceans Phyloinfomatics |
spellingShingle |
Bioinfomatics Climate Change Hybridization Systematics Transcriptomics Crustaceans Phyloinfomatics Smolina, Irina Kollias, Spyros Poortvliet, Marloes Nielsen, Torkel Lindeque, Penelope Castellani, Claudia Møller, Eva Blanco-Bercial, Leocadio Hoarau, Galice Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification |
topic_facet |
Bioinfomatics Climate Change Hybridization Systematics Transcriptomics Crustaceans Phyloinfomatics |
description |
Copepods of the genus Calanus are key zooplankton species in temperate to arctic marine ecosystems. Despite their ecological importance, species identification remains challenging. Furthermore, the recent report of hybrids among Calanus species highlights the need for diagnostic nuclear markers in order to efficiently identify parental species and hybrids. Using Next Generation Sequencing analysis of both the genome and transcriptome from two sibling species, C. finmarchichus and C. glacialis, we developed a panel of 12 nuclear insertion/deletion markers. All the markers showed species specific amplicon length. Furthermore most of the markers were successfully amplified in other Calanus species allowing the molecular identification of C. helgolandicus, C hyperboreus and C. marshallae. |
format |
Article in Journal/Newspaper |
author |
Smolina, Irina Kollias, Spyros Poortvliet, Marloes Nielsen, Torkel Lindeque, Penelope Castellani, Claudia Møller, Eva Blanco-Bercial, Leocadio Hoarau, Galice |
author_facet |
Smolina, Irina Kollias, Spyros Poortvliet, Marloes Nielsen, Torkel Lindeque, Penelope Castellani, Claudia Møller, Eva Blanco-Bercial, Leocadio Hoarau, Galice |
author_sort |
Smolina, Irina |
title |
Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification |
title_short |
Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification |
title_full |
Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification |
title_fullStr |
Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification |
title_full_unstemmed |
Data from: Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification |
title_sort |
data from: genome- and transcriptome-assisted development of nuclear insertion/deletion markers for calanus species (copepoda: calanoida) identification |
publishDate |
2014 |
url |
http://hdl.handle.net/10255/dryad.59157 https://doi.org/10.5061/dryad.n8f30 |
op_coverage |
North Atlantic Arctic Ocean |
geographic |
Arctic Arctic Ocean |
geographic_facet |
Arctic Arctic Ocean |
genre |
Arctic Arctic Ocean Atlantic Arctic Atlantic-Arctic Climate change North Atlantic Zooplankton Copepods |
genre_facet |
Arctic Arctic Ocean Atlantic Arctic Atlantic-Arctic Climate change North Atlantic Zooplankton Copepods |
op_relation |
doi:10.5061/dryad.n8f30/1 doi:10.5061/dryad.n8f30/2 doi:10.5061/dryad.n8f30/3 doi:10.5061/dryad.n8f30/4 doi:10.5061/dryad.n8f30/5 doi:10.1111/1755-0998.12241 PMID:24612683 doi:10.5061/dryad.n8f30 Smolina I, Kollias S, Poortvliet M, Nielsen T, Lindeque P, Castellani C, Møller E, Blanco-Bercial L, Hoarau G (2014) Genome- and transcriptome-assisted development of nuclear insertion/deletion markers for Calanus species (Copepoda: Calanoida) identification. Molecular Ecology Resources 14(5): 1072-1079. http://hdl.handle.net/10255/dryad.59157 |
op_doi |
https://doi.org/10.5061/dryad.n8f30 https://doi.org/10.5061/dryad.n8f30/1 https://doi.org/10.5061/dryad.n8f30/2 https://doi.org/10.5061/dryad.n8f30/3 https://doi.org/10.5061/dryad.n8f30/4 https://doi.org/10.5061/dryad.n8f30/5 https://doi.org/1 |
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1766324129706803200 |