Extract SNPs fixed between two groups

Extracts STACKS that contain SNPs fixed between two groups, where at least a certain number of populations are represented. This script allows for missing data. Accepts a STACKS haplotype export file. Run via a bash script in python 2.7.3. For more information, please contact nathanieldchu@gmail.com

Bibliographic Details
Main Authors: Chu, Nathaniel, Kaluziak, Stefan, Trussell, Geoffrey, Vollmer, Steven
Format: Report
Language:unknown
Published: 2014
Subjects:
Adaptation
Ecological Genetics
Phylogeography
Population Genetics - Empirical
Molluscs
Canada
North Atlantic
Online Access:http://hdl.handle.net/10255/dryad.58576
https://doi.org/10.5061/dryad.610dd/9
id ftdryad:oai:v1.datadryad.org:10255/dryad.58576
record_format openpolar
spelling ftdryad:oai:v1.datadryad.org:10255/dryad.58576 2023-05-15T17:29:40+02:00 Extract SNPs fixed between two groups Chu, Nathaniel Kaluziak, Stefan Trussell, Geoffrey Vollmer, Steven North Atlantic Northwestern Atlantic Rhode Island Massachusetts Maine Canada United States Holocene 2014-01-22T20:45:53Z http://hdl.handle.net/10255/dryad.58576 https://doi.org/10.5061/dryad.610dd/9 unknown doi:10.5061/dryad.610dd doi:10.5061/dryad.610dd/9 http://hdl.handle.net/10255/dryad.58576 http://creativecommons.org/publicdomain/zero/1.0/ CC0 PDM Adaptation Ecological Genetics Phylogeography Population Genetics - Empirical Molluscs Dataset untilArticleAppears 2014 ftdryad https://doi.org/10.5061/dryad.610dd/9 https://doi.org/10.5061/dryad.610dd 2020-01-01T15:05:59Z Extracts STACKS that contain SNPs fixed between two groups, where at least a certain number of populations are represented. This script allows for missing data. Accepts a STACKS haplotype export file. Run via a bash script in python 2.7.3. For more information, please contact nathanieldchu@gmail.com Report North Atlantic Dryad Digital Repository (Duke University) Canada
institution Open Polar
collection Dryad Digital Repository (Duke University)
op_collection_id ftdryad
language unknown
topic Adaptation
Ecological Genetics
Phylogeography
Population Genetics - Empirical
Molluscs
spellingShingle Adaptation
Ecological Genetics
Phylogeography
Population Genetics - Empirical
Molluscs
Chu, Nathaniel
Kaluziak, Stefan
Trussell, Geoffrey
Vollmer, Steven
Extract SNPs fixed between two groups
topic_facet Adaptation
Ecological Genetics
Phylogeography
Population Genetics - Empirical
Molluscs
description Extracts STACKS that contain SNPs fixed between two groups, where at least a certain number of populations are represented. This script allows for missing data. Accepts a STACKS haplotype export file. Run via a bash script in python 2.7.3. For more information, please contact nathanieldchu@gmail.com
format Report
author Chu, Nathaniel
Kaluziak, Stefan
Trussell, Geoffrey
Vollmer, Steven
author_facet Chu, Nathaniel
Kaluziak, Stefan
Trussell, Geoffrey
Vollmer, Steven
author_sort Chu, Nathaniel
title Extract SNPs fixed between two groups
title_short Extract SNPs fixed between two groups
title_full Extract SNPs fixed between two groups
title_fullStr Extract SNPs fixed between two groups
title_full_unstemmed Extract SNPs fixed between two groups
title_sort extract snps fixed between two groups
publishDate 2014
url http://hdl.handle.net/10255/dryad.58576
https://doi.org/10.5061/dryad.610dd/9
op_coverage North Atlantic
Northwestern Atlantic
Rhode Island
Massachusetts
Maine
Canada
United States
Holocene
geographic Canada
geographic_facet Canada
genre North Atlantic
genre_facet North Atlantic
op_relation doi:10.5061/dryad.610dd
doi:10.5061/dryad.610dd/9
http://hdl.handle.net/10255/dryad.58576
op_rights http://creativecommons.org/publicdomain/zero/1.0/
op_rightsnorm CC0
PDM
op_doi https://doi.org/10.5061/dryad.610dd/9
https://doi.org/10.5061/dryad.610dd
_version_ 1766124418921136128

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