SNP VCF file

VCF file containing info for SNPs called using the getsnpsfrommpileup.pl script. Settings used were: coverage >= 10, freq. of minor allele >= 0.2, read support for minor allele >= 3, number of alleles = 2. All SNPs were also verified using the program SysCall, and were retained only if the...

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Bibliographic Details
Main Authors: Malenfant, René M., Coltman, David W., Richardson, Evan S., Lunn, Nicholas J., Davis, Corey S.
Format: Report
Language:unknown
Published: 2013
Subjects:
Conservation Genetics
Ecological Genetics
Mammals
Climate Change
Population Genetics - Empirical
Quantitative Genetics
Canada
Churchill
Wapusk national park
Online Access:http://hdl.handle.net/10255/dryad.53192
https://doi.org/10.5061/dryad.606j6/2
id ftdryad:oai:v1.datadryad.org:10255/dryad.53192
record_format openpolar
spelling ftdryad:oai:v1.datadryad.org:10255/dryad.53192 2023-05-15T15:55:04+02:00 SNP VCF file Malenfant, René M. Coltman, David W. Richardson, Evan S. Lunn, Nicholas J. Davis, Corey S. Wapusk National Park Churchill Manitoba Canada Cenozoic 2013-11-12T18:39:26Z http://hdl.handle.net/10255/dryad.53192 https://doi.org/10.5061/dryad.606j6/2 unknown doi:10.5061/dryad.606j6 doi:10.5061/dryad.606j6/2 http://hdl.handle.net/10255/dryad.53192 http://creativecommons.org/publicdomain/zero/1.0/ CC0 PDM Conservation Genetics Ecological Genetics Mammals Climate Change Population Genetics - Empirical Quantitative Genetics Dataset untilArticleAppears 2013 ftdryad https://doi.org/10.5061/dryad.606j6/2 https://doi.org/10.5061/dryad.606j6 2020-01-01T15:03:25Z VCF file containing info for SNPs called using the getsnpsfrommpileup.pl script. Settings used were: coverage >= 10, freq. of minor allele >= 0.2, read support for minor allele >= 3, number of alleles = 2. All SNPs were also verified using the program SysCall, and were retained only if the posterior probability of being a variant was >= 0.95. Report Churchill Wapusk national park Dryad Digital Repository (Duke University) Canada
institution Open Polar
collection Dryad Digital Repository (Duke University)
op_collection_id ftdryad
language unknown
topic Conservation Genetics
Ecological Genetics
Mammals
Climate Change
Population Genetics - Empirical
Quantitative Genetics
spellingShingle Conservation Genetics
Ecological Genetics
Mammals
Climate Change
Population Genetics - Empirical
Quantitative Genetics
Malenfant, René M.
Coltman, David W.
Richardson, Evan S.
Lunn, Nicholas J.
Davis, Corey S.
SNP VCF file
topic_facet Conservation Genetics
Ecological Genetics
Mammals
Climate Change
Population Genetics - Empirical
Quantitative Genetics
description VCF file containing info for SNPs called using the getsnpsfrommpileup.pl script. Settings used were: coverage >= 10, freq. of minor allele >= 0.2, read support for minor allele >= 3, number of alleles = 2. All SNPs were also verified using the program SysCall, and were retained only if the posterior probability of being a variant was >= 0.95.
format Report
author Malenfant, René M.
Coltman, David W.
Richardson, Evan S.
Lunn, Nicholas J.
Davis, Corey S.
author_facet Malenfant, René M.
Coltman, David W.
Richardson, Evan S.
Lunn, Nicholas J.
Davis, Corey S.
author_sort Malenfant, René M.
title SNP VCF file
title_short SNP VCF file
title_full SNP VCF file
title_fullStr SNP VCF file
title_full_unstemmed SNP VCF file
title_sort snp vcf file
publishDate 2013
url http://hdl.handle.net/10255/dryad.53192
https://doi.org/10.5061/dryad.606j6/2
op_coverage Wapusk National Park
Churchill
Manitoba
Canada
Cenozoic
geographic Canada
geographic_facet Canada
genre Churchill
Wapusk national park
genre_facet Churchill
Wapusk national park
op_relation doi:10.5061/dryad.606j6
doi:10.5061/dryad.606j6/2
http://hdl.handle.net/10255/dryad.53192
op_rights http://creativecommons.org/publicdomain/zero/1.0/
op_rightsnorm CC0
PDM
op_doi https://doi.org/10.5061/dryad.606j6/2
https://doi.org/10.5061/dryad.606j6
_version_ 1766390401858535424

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