Data from: The complete sequence of the mitochondrial genome of Butomus umbellatus - a member of an early branching lineage of monocotyledons
In order to study the evolution of mitochondrial genomes in the early branching lineages of the monocotyledons, i.e., the Acorales and Alismatales, we are sequencing complete genomes from a suite of key taxa. As a starting point the present paper describes the mitochondrial genome of Butomus umbella...
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ftdryad:oai:v1.datadryad.org:10255/dryad.47541 2023-05-15T15:47:33+02:00 Data from: The complete sequence of the mitochondrial genome of Butomus umbellatus - a member of an early branching lineage of monocotyledons Cuenca, Argelia Petersen, Gitte Seberg, Ole Denmark 2013-05-22T16:36:40Z http://hdl.handle.net/10255/dryad.47541 https://doi.org/10.5061/dryad.42gc4 unknown doi:10.5061/dryad.42gc4/1 doi:10.1371/journal.pone.0061552 PMID:23637852 doi:10.5061/dryad.42gc4 Cuenca A, Petersen G, Seberg O (2013) The complete sequence of the mitochondrial genome of Butomus umbellatus - a member of an early branching lineage of monocotyledons. PLoS ONE 8(4): e61552. http://hdl.handle.net/10255/dryad.47541 plant mitochondria Monocots genome sequencing Article 2013 ftdryad https://doi.org/10.5061/dryad.42gc4 https://doi.org/10.5061/dryad.42gc4/1 https://doi.org/10.1371/journal.pone.0061552 2020-01-01T15:00:30Z In order to study the evolution of mitochondrial genomes in the early branching lineages of the monocotyledons, i.e., the Acorales and Alismatales, we are sequencing complete genomes from a suite of key taxa. As a starting point the present paper describes the mitochondrial genome of Butomus umbellatus (Butomaceae) based on next-generation sequencing data. The genome was assembled into a circular molecule, 450,826 bp in length. Coding sequences cover only 8.2% of the genome and include 28 protein coding genes, four rRNA genes, and 12 tRNA genes. Some of the tRNA genes and a 16S rRNA gene are transferred from the plastid genome. However, the total amount of recognized plastid sequences in the mitochondrial genome is only 1.5% and the amount of DNA transferred from the nucleus is also low. RNA editing is abundant and a total of 557 edited sites are predicted in the protein coding genes. Compared to the 40 angiosperm mitochondrial genomes sequenced to date, the GC content of the Butomus genome is uniquely high (49.1%). The overall similarity between the mitochondrial genomes of Butomus and Spirodela (Araceae), the closest relative yet sequenced, is low (less than 20%), and the two genomes differ in size by a factor 2. Gene order is also largely unconserved. However, based on its phylogenetic position within the core alismatids Butomus will serve as a good reference point for subsequent studies in the early branching lineages of the monocotyledons. Article in Journal/Newspaper Butomus umbellatus Dryad Digital Repository (Duke University) |
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Open Polar |
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Dryad Digital Repository (Duke University) |
op_collection_id |
ftdryad |
language |
unknown |
topic |
plant mitochondria Monocots genome sequencing |
spellingShingle |
plant mitochondria Monocots genome sequencing Cuenca, Argelia Petersen, Gitte Seberg, Ole Data from: The complete sequence of the mitochondrial genome of Butomus umbellatus - a member of an early branching lineage of monocotyledons |
topic_facet |
plant mitochondria Monocots genome sequencing |
description |
In order to study the evolution of mitochondrial genomes in the early branching lineages of the monocotyledons, i.e., the Acorales and Alismatales, we are sequencing complete genomes from a suite of key taxa. As a starting point the present paper describes the mitochondrial genome of Butomus umbellatus (Butomaceae) based on next-generation sequencing data. The genome was assembled into a circular molecule, 450,826 bp in length. Coding sequences cover only 8.2% of the genome and include 28 protein coding genes, four rRNA genes, and 12 tRNA genes. Some of the tRNA genes and a 16S rRNA gene are transferred from the plastid genome. However, the total amount of recognized plastid sequences in the mitochondrial genome is only 1.5% and the amount of DNA transferred from the nucleus is also low. RNA editing is abundant and a total of 557 edited sites are predicted in the protein coding genes. Compared to the 40 angiosperm mitochondrial genomes sequenced to date, the GC content of the Butomus genome is uniquely high (49.1%). The overall similarity between the mitochondrial genomes of Butomus and Spirodela (Araceae), the closest relative yet sequenced, is low (less than 20%), and the two genomes differ in size by a factor 2. Gene order is also largely unconserved. However, based on its phylogenetic position within the core alismatids Butomus will serve as a good reference point for subsequent studies in the early branching lineages of the monocotyledons. |
format |
Article in Journal/Newspaper |
author |
Cuenca, Argelia Petersen, Gitte Seberg, Ole |
author_facet |
Cuenca, Argelia Petersen, Gitte Seberg, Ole |
author_sort |
Cuenca, Argelia |
title |
Data from: The complete sequence of the mitochondrial genome of Butomus umbellatus - a member of an early branching lineage of monocotyledons |
title_short |
Data from: The complete sequence of the mitochondrial genome of Butomus umbellatus - a member of an early branching lineage of monocotyledons |
title_full |
Data from: The complete sequence of the mitochondrial genome of Butomus umbellatus - a member of an early branching lineage of monocotyledons |
title_fullStr |
Data from: The complete sequence of the mitochondrial genome of Butomus umbellatus - a member of an early branching lineage of monocotyledons |
title_full_unstemmed |
Data from: The complete sequence of the mitochondrial genome of Butomus umbellatus - a member of an early branching lineage of monocotyledons |
title_sort |
data from: the complete sequence of the mitochondrial genome of butomus umbellatus - a member of an early branching lineage of monocotyledons |
publishDate |
2013 |
url |
http://hdl.handle.net/10255/dryad.47541 https://doi.org/10.5061/dryad.42gc4 |
op_coverage |
Denmark |
genre |
Butomus umbellatus |
genre_facet |
Butomus umbellatus |
op_relation |
doi:10.5061/dryad.42gc4/1 doi:10.1371/journal.pone.0061552 PMID:23637852 doi:10.5061/dryad.42gc4 Cuenca A, Petersen G, Seberg O (2013) The complete sequence of the mitochondrial genome of Butomus umbellatus - a member of an early branching lineage of monocotyledons. PLoS ONE 8(4): e61552. http://hdl.handle.net/10255/dryad.47541 |
op_doi |
https://doi.org/10.5061/dryad.42gc4 https://doi.org/10.5061/dryad.42gc4/1 https://doi.org/10.1371/journal.pone.0061552 |
_version_ |
1766382449639555072 |