Plant tree (all) Mar 11
To create a phylogeny of locally occurring plants in Churchill, we used the existing DNA barcode library derived from the majority of the vascular plants of Churchill (Kuzmina et al. 2012) (Supp. Appendix 1). Each plant species targeted in our study had three DNA barcode gene regions (ITS2, rbcLa, a...
Main Authors: | , , , |
---|---|
Format: | Dataset |
Language: | unknown |
Published: |
2018
|
Subjects: | |
Online Access: | http://hdl.handle.net/10255/dryad.151870 https://doi.org/10.5061/dryad.5ds70/3 |
id |
ftdryad:oai:v1.datadryad.org:10255/dryad.151870 |
---|---|
record_format |
openpolar |
spelling |
ftdryad:oai:v1.datadryad.org:10255/dryad.151870 2023-05-15T15:01:18+02:00 Plant tree (all) Mar 11 Gibson, Daniel Adamowicz, Sarah Jacobs, Shoshanah R. Smith, M Alex sub-arctic Holocene 2018-01-03T20:29:11Z 455 http://hdl.handle.net/10255/dryad.151870 https://doi.org/10.5061/dryad.5ds70/3 unknown doi:10.5061/dryad.5ds70 doi:10.5061/dryad.5ds70/3 http://hdl.handle.net/10255/dryad.151870 http://creativecommons.org/publicdomain/zero/1.0/ CC0 PDM host specificity phylogenetic clustering aphids Dataset 2018 ftdryad https://doi.org/10.5061/dryad.5ds70/3 https://doi.org/10.5061/dryad.5ds70 2020-01-01T15:54:03Z To create a phylogeny of locally occurring plants in Churchill, we used the existing DNA barcode library derived from the majority of the vascular plants of Churchill (Kuzmina et al. 2012) (Supp. Appendix 1). Each plant species targeted in our study had three DNA barcode gene regions (ITS2, rbcLa, and matK; Hollingsworth et al. 2009) represented with the exception of Larix laricina, which lacked a matK sequence. For each plant species, and each gene region, the highest quality sequence (longest sequence containing the lowest number of ambiguous bases) was selected. The three genes were concatenated using FaBox (Villesen 2007), and the resulting contiguous sequence was used to create a Maximum-Likelihood tree (500 bootstrap replicates) in MEGA6. Dataset Arctic Dryad Digital Repository (Duke University) Arctic Hollingsworth ENVELOPE(50.367,50.367,-67.250,-67.250) |
institution |
Open Polar |
collection |
Dryad Digital Repository (Duke University) |
op_collection_id |
ftdryad |
language |
unknown |
topic |
host specificity phylogenetic clustering aphids |
spellingShingle |
host specificity phylogenetic clustering aphids Gibson, Daniel Adamowicz, Sarah Jacobs, Shoshanah R. Smith, M Alex Plant tree (all) Mar 11 |
topic_facet |
host specificity phylogenetic clustering aphids |
description |
To create a phylogeny of locally occurring plants in Churchill, we used the existing DNA barcode library derived from the majority of the vascular plants of Churchill (Kuzmina et al. 2012) (Supp. Appendix 1). Each plant species targeted in our study had three DNA barcode gene regions (ITS2, rbcLa, and matK; Hollingsworth et al. 2009) represented with the exception of Larix laricina, which lacked a matK sequence. For each plant species, and each gene region, the highest quality sequence (longest sequence containing the lowest number of ambiguous bases) was selected. The three genes were concatenated using FaBox (Villesen 2007), and the resulting contiguous sequence was used to create a Maximum-Likelihood tree (500 bootstrap replicates) in MEGA6. |
format |
Dataset |
author |
Gibson, Daniel Adamowicz, Sarah Jacobs, Shoshanah R. Smith, M Alex |
author_facet |
Gibson, Daniel Adamowicz, Sarah Jacobs, Shoshanah R. Smith, M Alex |
author_sort |
Gibson, Daniel |
title |
Plant tree (all) Mar 11 |
title_short |
Plant tree (all) Mar 11 |
title_full |
Plant tree (all) Mar 11 |
title_fullStr |
Plant tree (all) Mar 11 |
title_full_unstemmed |
Plant tree (all) Mar 11 |
title_sort |
plant tree (all) mar 11 |
publishDate |
2018 |
url |
http://hdl.handle.net/10255/dryad.151870 https://doi.org/10.5061/dryad.5ds70/3 |
op_coverage |
sub-arctic Holocene |
long_lat |
ENVELOPE(50.367,50.367,-67.250,-67.250) |
geographic |
Arctic Hollingsworth |
geographic_facet |
Arctic Hollingsworth |
genre |
Arctic |
genre_facet |
Arctic |
op_relation |
doi:10.5061/dryad.5ds70 doi:10.5061/dryad.5ds70/3 http://hdl.handle.net/10255/dryad.151870 |
op_rights |
http://creativecommons.org/publicdomain/zero/1.0/ |
op_rightsnorm |
CC0 PDM |
op_doi |
https://doi.org/10.5061/dryad.5ds70/3 https://doi.org/10.5061/dryad.5ds70 |
_version_ |
1766333318548160512 |