Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers.
Understanding the habitat use patterns of migratory fish, such as Atlantic salmon (Salmo salar L.), and the natural and anthropogenic impacts on them, is aided by the ability to identify individuals to their stock of origin. Presented here are the results of an analysis of informative single nucleot...
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ftdryad:oai:v1.datadryad.org:10255/dryad.121218 2023-05-15T15:29:29+02:00 Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. Gilbey, John Cauwelier, Eef Coulson, Mark W. Stradmeyer, Lee Sampayo, James N. Armstrong, Anja Verspoor, Eric Corrigan, Laura Shelley, Jonathan Middlemas, Stuart United Kingdom Scotland England Holocene 2016-12-16T15:37:57Z http://hdl.handle.net/10255/dryad.121218 https://doi.org/10.5061/dryad.12d36 unknown doi:10.5061/dryad.12d36/1 doi:10.1371/journal.pone.0164327 doi:10.5061/dryad.12d36 Gilbey J, Cauwelier E, Coulson MW, Stradmeyer L, Sampayo JN, Armstrong A, Verspoor E, Corrigan L, Shelley J, Middlemas S (2016) Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. PLOS ONE 11(10): e0164327. 1932-6203 http://hdl.handle.net/10255/dryad.121218 Atlantic salmon SNP genetic structuring individual assignment mixed stock analysis Article 2016 ftdryad https://doi.org/10.5061/dryad.12d36 https://doi.org/10.5061/dryad.12d36/1 https://doi.org/10.1371/journal.pone.0164327 2020-01-01T15:37:46Z Understanding the habitat use patterns of migratory fish, such as Atlantic salmon (Salmo salar L.), and the natural and anthropogenic impacts on them, is aided by the ability to identify individuals to their stock of origin. Presented here are the results of an analysis of informative single nucleotide polymorphic (SNP) markers for detecting genetic structuring in Atlantic salmon in Scotland and NE England and their ability to allow accurate genetic stock identification. 3,787 fish from 147 sites covering 27 rivers were screened at 5,568 SNP markers. In order to identify a cost-effective subset of SNPs, they were ranked according to their ability to differentiate between fish from different rivers. A panel of 288 SNPs was used to examine both individual assignments and mixed stock fisheries and eighteen assignment units were defined. The results improved greatly on previously available methods and, for the first time, fish caught in the marine environment can be confidently assigned to geographically coherent units within Scotland and NE England, including individual rivers. As such, this SNP panel has the potential to aid understanding of the various influences acting upon Atlantic salmon on their marine migrations, be they natural environmental variations and/or anthropogenic impacts, such as mixed stock fisheries and interactions with marine power generation installations. Article in Journal/Newspaper Atlantic salmon Salmo salar Dryad Digital Repository (Duke University) |
institution |
Open Polar |
collection |
Dryad Digital Repository (Duke University) |
op_collection_id |
ftdryad |
language |
unknown |
topic |
Atlantic salmon SNP genetic structuring individual assignment mixed stock analysis |
spellingShingle |
Atlantic salmon SNP genetic structuring individual assignment mixed stock analysis Gilbey, John Cauwelier, Eef Coulson, Mark W. Stradmeyer, Lee Sampayo, James N. Armstrong, Anja Verspoor, Eric Corrigan, Laura Shelley, Jonathan Middlemas, Stuart Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. |
topic_facet |
Atlantic salmon SNP genetic structuring individual assignment mixed stock analysis |
description |
Understanding the habitat use patterns of migratory fish, such as Atlantic salmon (Salmo salar L.), and the natural and anthropogenic impacts on them, is aided by the ability to identify individuals to their stock of origin. Presented here are the results of an analysis of informative single nucleotide polymorphic (SNP) markers for detecting genetic structuring in Atlantic salmon in Scotland and NE England and their ability to allow accurate genetic stock identification. 3,787 fish from 147 sites covering 27 rivers were screened at 5,568 SNP markers. In order to identify a cost-effective subset of SNPs, they were ranked according to their ability to differentiate between fish from different rivers. A panel of 288 SNPs was used to examine both individual assignments and mixed stock fisheries and eighteen assignment units were defined. The results improved greatly on previously available methods and, for the first time, fish caught in the marine environment can be confidently assigned to geographically coherent units within Scotland and NE England, including individual rivers. As such, this SNP panel has the potential to aid understanding of the various influences acting upon Atlantic salmon on their marine migrations, be they natural environmental variations and/or anthropogenic impacts, such as mixed stock fisheries and interactions with marine power generation installations. |
format |
Article in Journal/Newspaper |
author |
Gilbey, John Cauwelier, Eef Coulson, Mark W. Stradmeyer, Lee Sampayo, James N. Armstrong, Anja Verspoor, Eric Corrigan, Laura Shelley, Jonathan Middlemas, Stuart |
author_facet |
Gilbey, John Cauwelier, Eef Coulson, Mark W. Stradmeyer, Lee Sampayo, James N. Armstrong, Anja Verspoor, Eric Corrigan, Laura Shelley, Jonathan Middlemas, Stuart |
author_sort |
Gilbey, John |
title |
Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. |
title_short |
Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. |
title_full |
Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. |
title_fullStr |
Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. |
title_full_unstemmed |
Data from: Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. |
title_sort |
data from: accuracy of assignment of atlantic salmon (salmo salar l.) to rivers and regions in scotland and northeast england based on single nucleotide polymorphism (snp) markers. |
publishDate |
2016 |
url |
http://hdl.handle.net/10255/dryad.121218 https://doi.org/10.5061/dryad.12d36 |
op_coverage |
United Kingdom Scotland England Holocene |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_relation |
doi:10.5061/dryad.12d36/1 doi:10.1371/journal.pone.0164327 doi:10.5061/dryad.12d36 Gilbey J, Cauwelier E, Coulson MW, Stradmeyer L, Sampayo JN, Armstrong A, Verspoor E, Corrigan L, Shelley J, Middlemas S (2016) Accuracy of assignment of Atlantic salmon (Salmo salar L.) to rivers and regions in Scotland and northeast England based on single nucleotide polymorphism (SNP) markers. PLOS ONE 11(10): e0164327. 1932-6203 http://hdl.handle.net/10255/dryad.121218 |
op_doi |
https://doi.org/10.5061/dryad.12d36 https://doi.org/10.5061/dryad.12d36/1 https://doi.org/10.1371/journal.pone.0164327 |
_version_ |
1766359895027744768 |