Data from: A five gene phylogenetic study of Fuireneae (Cyperaceae) with a revision of Isolepis humillima

Cyperaceae tribe Fuireneae consists of six genera (Actinoscirpus, Pseudoschoenus, Fuirena, Bolboschoenus, Schoenoplectus, and Schoenoplectiella) and approximately 155 species distributed widely across all continents except Antarctica. Recent molecular analyses suggest that Fuireneae is paraphyletic...

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Main Authors: Dame, Heather E., Shiels, Derek R., Linton, Eric, Starr, Julian R., Shorkey, Adriane L., Fleming, Samantha, Lichtenwald, Samantha K., Schick, Elizabeth R., Pozo, David, Monfils, Anna K.
Format: Article in Journal/Newspaper
Language:unknown
Published: 2017
Subjects:
Online Access:http://hdl.handle.net/10255/dryad.114250
https://doi.org/10.5061/dryad.j03q3
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spelling ftdryad:oai:v1.datadryad.org:10255/dryad.114250 2023-05-15T13:40:12+02:00 Data from: A five gene phylogenetic study of Fuireneae (Cyperaceae) with a revision of Isolepis humillima Dame, Heather E. Shiels, Derek R. Linton, Eric Starr, Julian R. Shorkey, Adriane L. Fleming, Samantha Lichtenwald, Samantha K. Schick, Elizabeth R. Pozo, David Monfils, Anna K. 2017-03-28T15:18:06Z http://hdl.handle.net/10255/dryad.114250 https://doi.org/10.5061/dryad.j03q3 unknown doi:10.5061/dryad.j03q3/1 doi:10.5061/dryad.j03q3/2 doi:10.5061/dryad.j03q3/3 doi:10.5061/dryad.j03q3/4 doi:10.5061/dryad.j03q3/5 doi:10.1600/036364417x694601 doi:10.5061/dryad.j03q3 Glon HE, Shiels DR, Linton E, Starr JR, Shorkey AL, Fleming S, Lichtenwald SK, Schick ER, Pozo D, Monfils AK (2017) A five gene phylogenetic study of Fuireneae (Cyperaceae) with a revision of Isolepis humillima. Systematic Botany 42(1): 26-36. 0363-6445 http://hdl.handle.net/10255/dryad.114250 Cyperaceae Fuireneae Phylogeny Chloroplast DNA Nuclear DNA Article 2017 ftdryad https://doi.org/10.5061/dryad.j03q3 https://doi.org/10.5061/dryad.j03q3/1 https://doi.org/10.5061/dryad.j03q3/2 https://doi.org/10.5061/dryad.j03q3/3 https://doi.org/10.5061/dryad.j03q3/4 https://doi.org/10.5061/dryad.j03q3/5 https://doi.org/1 2020-01-01T15:33:56Z Cyperaceae tribe Fuireneae consists of six genera (Actinoscirpus, Pseudoschoenus, Fuirena, Bolboschoenus, Schoenoplectus, and Schoenoplectiella) and approximately 155 species distributed widely across all continents except Antarctica. Recent molecular analyses suggest that Fuireneae is paraphyletic with respect to Cypereae, but limited taxonomic sampling and low branch support have resulted in unresolved relationships among key genera. To address the potential paraphyly of Fuireneae as well as intratribal and intertribal relationships, thirty taxa representing major lineages from the six Fuireneae genera within Cypereae were sequenced for five coding and non-coding regions from the nuclear (internal transcribed spacer, ITS) and chloroplast (trnL intron/trnL-trnF spacer; partial ndhF, rbcL and matK genes) genomes. Maximum parsimony, maximum likelihood and Bayesian analyses of the dataset strongly support Fuireneae as a grade of three clades: (1) Fuirena, (2) Bolboschoenus and (3) a group composed of Cypereae and the four remaining Fuireneae genera (Schoenoplectus, Schoenoplectiella, Actinoscirpus, and Pseudoschoenus). Individual and combined gene trees consistently position Isolepis humillima within a well supported clade consisting of species in Schoenoplectiella sect. Schoenoplectiella. Based on molecular evidence, we transfer Isolepis humillima to Schoenoplectiella humillima , and suggest that a large-scale revision of tribal limits is required to reflect the natural relationships of the genera currently treated in Fuireneae. Article in Journal/Newspaper Antarc* Antarctica Dryad Digital Repository (Duke University)
institution Open Polar
collection Dryad Digital Repository (Duke University)
op_collection_id ftdryad
language unknown
topic Cyperaceae
Fuireneae
Phylogeny
Chloroplast DNA
Nuclear DNA
spellingShingle Cyperaceae
Fuireneae
Phylogeny
Chloroplast DNA
Nuclear DNA
Dame, Heather E.
Shiels, Derek R.
Linton, Eric
Starr, Julian R.
Shorkey, Adriane L.
Fleming, Samantha
Lichtenwald, Samantha K.
Schick, Elizabeth R.
Pozo, David
Monfils, Anna K.
Data from: A five gene phylogenetic study of Fuireneae (Cyperaceae) with a revision of Isolepis humillima
topic_facet Cyperaceae
Fuireneae
Phylogeny
Chloroplast DNA
Nuclear DNA
description Cyperaceae tribe Fuireneae consists of six genera (Actinoscirpus, Pseudoschoenus, Fuirena, Bolboschoenus, Schoenoplectus, and Schoenoplectiella) and approximately 155 species distributed widely across all continents except Antarctica. Recent molecular analyses suggest that Fuireneae is paraphyletic with respect to Cypereae, but limited taxonomic sampling and low branch support have resulted in unresolved relationships among key genera. To address the potential paraphyly of Fuireneae as well as intratribal and intertribal relationships, thirty taxa representing major lineages from the six Fuireneae genera within Cypereae were sequenced for five coding and non-coding regions from the nuclear (internal transcribed spacer, ITS) and chloroplast (trnL intron/trnL-trnF spacer; partial ndhF, rbcL and matK genes) genomes. Maximum parsimony, maximum likelihood and Bayesian analyses of the dataset strongly support Fuireneae as a grade of three clades: (1) Fuirena, (2) Bolboschoenus and (3) a group composed of Cypereae and the four remaining Fuireneae genera (Schoenoplectus, Schoenoplectiella, Actinoscirpus, and Pseudoschoenus). Individual and combined gene trees consistently position Isolepis humillima within a well supported clade consisting of species in Schoenoplectiella sect. Schoenoplectiella. Based on molecular evidence, we transfer Isolepis humillima to Schoenoplectiella humillima , and suggest that a large-scale revision of tribal limits is required to reflect the natural relationships of the genera currently treated in Fuireneae.
format Article in Journal/Newspaper
author Dame, Heather E.
Shiels, Derek R.
Linton, Eric
Starr, Julian R.
Shorkey, Adriane L.
Fleming, Samantha
Lichtenwald, Samantha K.
Schick, Elizabeth R.
Pozo, David
Monfils, Anna K.
author_facet Dame, Heather E.
Shiels, Derek R.
Linton, Eric
Starr, Julian R.
Shorkey, Adriane L.
Fleming, Samantha
Lichtenwald, Samantha K.
Schick, Elizabeth R.
Pozo, David
Monfils, Anna K.
author_sort Dame, Heather E.
title Data from: A five gene phylogenetic study of Fuireneae (Cyperaceae) with a revision of Isolepis humillima
title_short Data from: A five gene phylogenetic study of Fuireneae (Cyperaceae) with a revision of Isolepis humillima
title_full Data from: A five gene phylogenetic study of Fuireneae (Cyperaceae) with a revision of Isolepis humillima
title_fullStr Data from: A five gene phylogenetic study of Fuireneae (Cyperaceae) with a revision of Isolepis humillima
title_full_unstemmed Data from: A five gene phylogenetic study of Fuireneae (Cyperaceae) with a revision of Isolepis humillima
title_sort data from: a five gene phylogenetic study of fuireneae (cyperaceae) with a revision of isolepis humillima
publishDate 2017
url http://hdl.handle.net/10255/dryad.114250
https://doi.org/10.5061/dryad.j03q3
genre Antarc*
Antarctica
genre_facet Antarc*
Antarctica
op_relation doi:10.5061/dryad.j03q3/1
doi:10.5061/dryad.j03q3/2
doi:10.5061/dryad.j03q3/3
doi:10.5061/dryad.j03q3/4
doi:10.5061/dryad.j03q3/5
doi:10.1600/036364417x694601
doi:10.5061/dryad.j03q3
Glon HE, Shiels DR, Linton E, Starr JR, Shorkey AL, Fleming S, Lichtenwald SK, Schick ER, Pozo D, Monfils AK (2017) A five gene phylogenetic study of Fuireneae (Cyperaceae) with a revision of Isolepis humillima. Systematic Botany 42(1): 26-36.
0363-6445
http://hdl.handle.net/10255/dryad.114250
op_doi https://doi.org/10.5061/dryad.j03q3
https://doi.org/10.5061/dryad.j03q3/1
https://doi.org/10.5061/dryad.j03q3/2
https://doi.org/10.5061/dryad.j03q3/3
https://doi.org/10.5061/dryad.j03q3/4
https://doi.org/10.5061/dryad.j03q3/5
https://doi.org/1
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