CfinmarchicusReferenceTranscriptome

• Main Authors: Roncalli, Vittoria, Cieslak, Matthew C., Lenz, Petra H.
• Format: Dataset
• Language: unknown
• Published: 2016
• Subjects: sub-optimal conditions; gene expression; cellular stress response; detoxification; Calanus finmarchicus
• Online Access: http://hdl.handle.net/10255/dryad.112738; https://doi.org/10.5061/dryad.11978/7

Annotation list for Calanus finmarchicus reference transcriptome consisting of a total of 38,104 transcripts (Lenz et al., 2014). For each transcript NCBI Accession No., sequence length (bp) and annotation results are reported. Annotation results from blastx against Non-redundant (NR) protein database (BLAST2GO) consist of: sequence description, hit description, hit accession No., e-value, similarity score, alignment length and positives. In bold transcripts that resulted annotated using BLAST2GO, but were also in silico annotated using the workflow described in Christie et al., 2013a; Christie et al., 2013b; Christie et al., 2014. In red bolded, transcripts that did not retrieve annotation using BLAST2GO, but were in silico annotated as described in Christie et al., 2013a; Christie et al., 2013b; Christie et al., 2014. For bolded transcripts (red and black) the assigned name and reference paper are listed. For more information on the transcriptome refer to Lenz et al., 2014.