CfinmarchicusReferenceTranscriptome
Annotation list for Calanus finmarchicus reference transcriptome consisting of a total of 38,104 transcripts (Lenz et al., 2014). For each transcript NCBI Accession No., sequence length (bp) and annotation results are reported. Annotation results from blastx against Non-redundant (NR) protein databa...
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Online Access: | http://hdl.handle.net/10255/dryad.112738 https://doi.org/10.5061/dryad.11978/7 |
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ftdryad:oai:v1.datadryad.org:10255/dryad.112738 2023-05-15T15:47:59+02:00 CfinmarchicusReferenceTranscriptome Roncalli, Vittoria Cieslak, Matthew C. Lenz, Petra H. Gulf of Maine United States of America 2016-06-02T18:14:16Z 8217999 http://hdl.handle.net/10255/dryad.112738 https://doi.org/10.5061/dryad.11978/7 unknown doi:10.5061/dryad.11978 doi:10.5061/dryad.11978/7 http://hdl.handle.net/10255/dryad.112738 http://creativecommons.org/publicdomain/zero/1.0/ CC0 PDM sub-optimal conditions gene expression cellular stress response detoxification Dataset none 2016 ftdryad https://doi.org/10.5061/dryad.11978/7 https://doi.org/10.5061/dryad.11978 2020-01-01T15:33:06Z Annotation list for Calanus finmarchicus reference transcriptome consisting of a total of 38,104 transcripts (Lenz et al., 2014). For each transcript NCBI Accession No., sequence length (bp) and annotation results are reported. Annotation results from blastx against Non-redundant (NR) protein database (BLAST2GO) consist of: sequence description, hit description, hit accession No., e-value, similarity score, alignment length and positives. In bold transcripts that resulted annotated using BLAST2GO, but were also in silico annotated using the workflow described in Christie et al., 2013a; Christie et al., 2013b; Christie et al., 2014. In red bolded, transcripts that did not retrieve annotation using BLAST2GO, but were in silico annotated as described in Christie et al., 2013a; Christie et al., 2013b; Christie et al., 2014. For bolded transcripts (red and black) the assigned name and reference paper are listed. For more information on the transcriptome refer to Lenz et al., 2014. Dataset Calanus finmarchicus Dryad Digital Repository (Duke University) |
institution |
Open Polar |
collection |
Dryad Digital Repository (Duke University) |
op_collection_id |
ftdryad |
language |
unknown |
topic |
sub-optimal conditions gene expression cellular stress response detoxification |
spellingShingle |
sub-optimal conditions gene expression cellular stress response detoxification Roncalli, Vittoria Cieslak, Matthew C. Lenz, Petra H. CfinmarchicusReferenceTranscriptome |
topic_facet |
sub-optimal conditions gene expression cellular stress response detoxification |
description |
Annotation list for Calanus finmarchicus reference transcriptome consisting of a total of 38,104 transcripts (Lenz et al., 2014). For each transcript NCBI Accession No., sequence length (bp) and annotation results are reported. Annotation results from blastx against Non-redundant (NR) protein database (BLAST2GO) consist of: sequence description, hit description, hit accession No., e-value, similarity score, alignment length and positives. In bold transcripts that resulted annotated using BLAST2GO, but were also in silico annotated using the workflow described in Christie et al., 2013a; Christie et al., 2013b; Christie et al., 2014. In red bolded, transcripts that did not retrieve annotation using BLAST2GO, but were in silico annotated as described in Christie et al., 2013a; Christie et al., 2013b; Christie et al., 2014. For bolded transcripts (red and black) the assigned name and reference paper are listed. For more information on the transcriptome refer to Lenz et al., 2014. |
format |
Dataset |
author |
Roncalli, Vittoria Cieslak, Matthew C. Lenz, Petra H. |
author_facet |
Roncalli, Vittoria Cieslak, Matthew C. Lenz, Petra H. |
author_sort |
Roncalli, Vittoria |
title |
CfinmarchicusReferenceTranscriptome |
title_short |
CfinmarchicusReferenceTranscriptome |
title_full |
CfinmarchicusReferenceTranscriptome |
title_fullStr |
CfinmarchicusReferenceTranscriptome |
title_full_unstemmed |
CfinmarchicusReferenceTranscriptome |
title_sort |
cfinmarchicusreferencetranscriptome |
publishDate |
2016 |
url |
http://hdl.handle.net/10255/dryad.112738 https://doi.org/10.5061/dryad.11978/7 |
op_coverage |
Gulf of Maine United States of America |
genre |
Calanus finmarchicus |
genre_facet |
Calanus finmarchicus |
op_relation |
doi:10.5061/dryad.11978 doi:10.5061/dryad.11978/7 http://hdl.handle.net/10255/dryad.112738 |
op_rights |
http://creativecommons.org/publicdomain/zero/1.0/ |
op_rightsnorm |
CC0 PDM |
op_doi |
https://doi.org/10.5061/dryad.11978/7 https://doi.org/10.5061/dryad.11978 |
_version_ |
1766382967387586560 |