Data from: The use of an unsupervised learning approach for characterizing latent behaviors in accelerometer data

The recent increase in data accuracy from high resolution accelerometers offers substantial potential for improved understanding and prediction of animal movements. However, current approaches used for analysing these multivariable datasets typically require existing knowledge of the behaviors of th...

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Main Authors: Chimienti, Marianna, Cornulier, Thomas, Owen, Ellie, Bolton, Mark, Davies, Ian M., Travis, Justin M. J., Scott, Beth E.
Format: Article in Journal/Newspaper
Language:unknown
Published: 2016
Subjects:
Online Access:http://hdl.handle.net/10255/dryad.105878
https://doi.org/10.5061/dryad.5rg72
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spelling ftdryad:oai:v1.datadryad.org:10255/dryad.105878 2023-05-15T13:12:18+02:00 Data from: The use of an unsupervised learning approach for characterizing latent behaviors in accelerometer data Chimienti, Marianna Cornulier, Thomas Owen, Ellie Bolton, Mark Davies, Ian M. Travis, Justin M. J. Scott, Beth E. 2016-01-13T19:31:05Z http://hdl.handle.net/10255/dryad.105878 https://doi.org/10.5061/dryad.5rg72 unknown doi:10.5061/dryad.5rg72/1 doi:10.5061/dryad.5rg72/2 doi:10.1002/ece3.1914 PMID:26865961 doi:10.5061/dryad.5rg72 Chimienti M, Cornulier T, Owen E, Bolton M, Davies IM, Travis JMJ, Scott BE (2016) The use of an unsupervised learning approach for characterizing latent behaviors in accelerometer data. Ecology and Evolution 6(3): 727–741. http://hdl.handle.net/10255/dryad.105878 Article 2016 ftdryad https://doi.org/10.5061/dryad.5rg72 https://doi.org/10.5061/dryad.5rg72/1 https://doi.org/10.5061/dryad.5rg72/2 https://doi.org/10.1002/ece3.1914 2020-01-01T15:29:09Z The recent increase in data accuracy from high resolution accelerometers offers substantial potential for improved understanding and prediction of animal movements. However, current approaches used for analysing these multivariable datasets typically require existing knowledge of the behaviors of the animals to inform the behavioral classification process. These methods are thus not well-suited for the many cases where limited knowledge of the different behaviors performed exist. Here, we introduce the use of an unsupervised learning algorithm. To illustrate the method's capability we analyse data collected using a combination of GPS and Accelerometers on two seabird species: razorbills (Alca torda) and common guillemots (Uria aalge). We applied the unsupervised learning algorithm Expectation Maximization to characterize latent behavioral states both above and below water at both individual and group level. The application of this flexible approach yielded significant new insights into the foraging strategies of the two study species, both above and below the surface of the water. In addition to general behavioral modes such as flying, floating, as well as descending and ascending phases within the water column, this approach allowed an exploration of previously unstudied and important behaviors such as searching and prey chasing/capture events. We propose that this unsupervised learning approach provides an ideal tool for the systematic analysis of such complex multivariable movement data that are increasingly being obtained with accelerometer tags across species. In particular, we recommend its application in cases where we have limited current knowledge of the behaviors performed and existing supervised learning approaches may have limited utility. Article in Journal/Newspaper Alca torda Uria aalge uria Dryad Digital Repository (Duke University)
institution Open Polar
collection Dryad Digital Repository (Duke University)
op_collection_id ftdryad
language unknown
description The recent increase in data accuracy from high resolution accelerometers offers substantial potential for improved understanding and prediction of animal movements. However, current approaches used for analysing these multivariable datasets typically require existing knowledge of the behaviors of the animals to inform the behavioral classification process. These methods are thus not well-suited for the many cases where limited knowledge of the different behaviors performed exist. Here, we introduce the use of an unsupervised learning algorithm. To illustrate the method's capability we analyse data collected using a combination of GPS and Accelerometers on two seabird species: razorbills (Alca torda) and common guillemots (Uria aalge). We applied the unsupervised learning algorithm Expectation Maximization to characterize latent behavioral states both above and below water at both individual and group level. The application of this flexible approach yielded significant new insights into the foraging strategies of the two study species, both above and below the surface of the water. In addition to general behavioral modes such as flying, floating, as well as descending and ascending phases within the water column, this approach allowed an exploration of previously unstudied and important behaviors such as searching and prey chasing/capture events. We propose that this unsupervised learning approach provides an ideal tool for the systematic analysis of such complex multivariable movement data that are increasingly being obtained with accelerometer tags across species. In particular, we recommend its application in cases where we have limited current knowledge of the behaviors performed and existing supervised learning approaches may have limited utility.
format Article in Journal/Newspaper
author Chimienti, Marianna
Cornulier, Thomas
Owen, Ellie
Bolton, Mark
Davies, Ian M.
Travis, Justin M. J.
Scott, Beth E.
spellingShingle Chimienti, Marianna
Cornulier, Thomas
Owen, Ellie
Bolton, Mark
Davies, Ian M.
Travis, Justin M. J.
Scott, Beth E.
Data from: The use of an unsupervised learning approach for characterizing latent behaviors in accelerometer data
author_facet Chimienti, Marianna
Cornulier, Thomas
Owen, Ellie
Bolton, Mark
Davies, Ian M.
Travis, Justin M. J.
Scott, Beth E.
author_sort Chimienti, Marianna
title Data from: The use of an unsupervised learning approach for characterizing latent behaviors in accelerometer data
title_short Data from: The use of an unsupervised learning approach for characterizing latent behaviors in accelerometer data
title_full Data from: The use of an unsupervised learning approach for characterizing latent behaviors in accelerometer data
title_fullStr Data from: The use of an unsupervised learning approach for characterizing latent behaviors in accelerometer data
title_full_unstemmed Data from: The use of an unsupervised learning approach for characterizing latent behaviors in accelerometer data
title_sort data from: the use of an unsupervised learning approach for characterizing latent behaviors in accelerometer data
publishDate 2016
url http://hdl.handle.net/10255/dryad.105878
https://doi.org/10.5061/dryad.5rg72
genre Alca torda
Uria aalge
uria
genre_facet Alca torda
Uria aalge
uria
op_relation doi:10.5061/dryad.5rg72/1
doi:10.5061/dryad.5rg72/2
doi:10.1002/ece3.1914
PMID:26865961
doi:10.5061/dryad.5rg72
Chimienti M, Cornulier T, Owen E, Bolton M, Davies IM, Travis JMJ, Scott BE (2016) The use of an unsupervised learning approach for characterizing latent behaviors in accelerometer data. Ecology and Evolution 6(3): 727–741.
http://hdl.handle.net/10255/dryad.105878
op_doi https://doi.org/10.5061/dryad.5rg72
https://doi.org/10.5061/dryad.5rg72/1
https://doi.org/10.5061/dryad.5rg72/2
https://doi.org/10.1002/ece3.1914
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