SHIMMER (1.0): a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems

SHIMMER (Soil biogeocHemIcal Model for Microbial Ecosystem Response) is a new numerical modelling framework designed to simulate microbial dynamics and biogeochemical cycling during initial ecosystem development in glacier forefield soils. However, it is also transferable to other extreme ecosystem...

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Published in:Geoscientific Model Development
Main Authors: J. A. Bradley, A. M. Anesio, J. S. Singarayer, M. R. Heath, S. Arndt
Format: Article in Journal/Newspaper
Language:English
Published: Copernicus Publications 2015
Subjects:
Online Access:https://doi.org/10.5194/gmd-8-3441-2015
https://doaj.org/article/ffa16bd9a7874af38a2ee1586b661b11
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spelling ftdoajarticles:oai:doaj.org/article:ffa16bd9a7874af38a2ee1586b661b11 2023-05-15T16:22:29+02:00 SHIMMER (1.0): a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems J. A. Bradley A. M. Anesio J. S. Singarayer M. R. Heath S. Arndt 2015-10-01T00:00:00Z https://doi.org/10.5194/gmd-8-3441-2015 https://doaj.org/article/ffa16bd9a7874af38a2ee1586b661b11 EN eng Copernicus Publications http://www.geosci-model-dev.net/8/3441/2015/gmd-8-3441-2015.pdf https://doaj.org/toc/1991-959X https://doaj.org/toc/1991-9603 1991-959X 1991-9603 doi:10.5194/gmd-8-3441-2015 https://doaj.org/article/ffa16bd9a7874af38a2ee1586b661b11 Geoscientific Model Development, Vol 8, Iss 10, Pp 3441-3470 (2015) Geology QE1-996.5 article 2015 ftdoajarticles https://doi.org/10.5194/gmd-8-3441-2015 2022-12-31T16:30:53Z SHIMMER (Soil biogeocHemIcal Model for Microbial Ecosystem Response) is a new numerical modelling framework designed to simulate microbial dynamics and biogeochemical cycling during initial ecosystem development in glacier forefield soils. However, it is also transferable to other extreme ecosystem types (such as desert soils or the surface of glaciers). The rationale for model development arises from decades of empirical observations in glacier forefields, and enables a quantitative and process focussed approach. Here, we provide a detailed description of SHIMMER, test its performance in two case study forefields: the Damma Glacier (Switzerland) and the Athabasca Glacier (Canada) and analyse sensitivity to identify the most sensitive and unconstrained model parameters. Results show that the accumulation of microbial biomass is highly dependent on variation in microbial growth and death rate constants, Q 10 values, the active fraction of microbial biomass and the reactivity of organic matter. The model correctly predicts the rapid accumulation of microbial biomass observed during the initial stages of succession in the forefields of both the case study systems. Primary production is responsible for the initial build-up of labile substrate that subsequently supports heterotrophic growth. However, allochthonous contributions of organic matter, and nitrogen fixation, are important in sustaining this productivity. The development and application of SHIMMER also highlights aspects of these systems that require further empirical research: quantifying nutrient budgets and biogeochemical rates, exploring seasonality and microbial growth and cell death. This will lead to increased understanding of how glacier forefields contribute to global biogeochemical cycling and climate under future ice retreat. Article in Journal/Newspaper glacier* Directory of Open Access Journals: DOAJ Articles Canada Geoscientific Model Development 8 10 3441 3470
institution Open Polar
collection Directory of Open Access Journals: DOAJ Articles
op_collection_id ftdoajarticles
language English
topic Geology
QE1-996.5
spellingShingle Geology
QE1-996.5
J. A. Bradley
A. M. Anesio
J. S. Singarayer
M. R. Heath
S. Arndt
SHIMMER (1.0): a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
topic_facet Geology
QE1-996.5
description SHIMMER (Soil biogeocHemIcal Model for Microbial Ecosystem Response) is a new numerical modelling framework designed to simulate microbial dynamics and biogeochemical cycling during initial ecosystem development in glacier forefield soils. However, it is also transferable to other extreme ecosystem types (such as desert soils or the surface of glaciers). The rationale for model development arises from decades of empirical observations in glacier forefields, and enables a quantitative and process focussed approach. Here, we provide a detailed description of SHIMMER, test its performance in two case study forefields: the Damma Glacier (Switzerland) and the Athabasca Glacier (Canada) and analyse sensitivity to identify the most sensitive and unconstrained model parameters. Results show that the accumulation of microbial biomass is highly dependent on variation in microbial growth and death rate constants, Q 10 values, the active fraction of microbial biomass and the reactivity of organic matter. The model correctly predicts the rapid accumulation of microbial biomass observed during the initial stages of succession in the forefields of both the case study systems. Primary production is responsible for the initial build-up of labile substrate that subsequently supports heterotrophic growth. However, allochthonous contributions of organic matter, and nitrogen fixation, are important in sustaining this productivity. The development and application of SHIMMER also highlights aspects of these systems that require further empirical research: quantifying nutrient budgets and biogeochemical rates, exploring seasonality and microbial growth and cell death. This will lead to increased understanding of how glacier forefields contribute to global biogeochemical cycling and climate under future ice retreat.
format Article in Journal/Newspaper
author J. A. Bradley
A. M. Anesio
J. S. Singarayer
M. R. Heath
S. Arndt
author_facet J. A. Bradley
A. M. Anesio
J. S. Singarayer
M. R. Heath
S. Arndt
author_sort J. A. Bradley
title SHIMMER (1.0): a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
title_short SHIMMER (1.0): a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
title_full SHIMMER (1.0): a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
title_fullStr SHIMMER (1.0): a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
title_full_unstemmed SHIMMER (1.0): a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
title_sort shimmer (1.0): a novel mathematical model for microbial and biogeochemical dynamics in glacier forefield ecosystems
publisher Copernicus Publications
publishDate 2015
url https://doi.org/10.5194/gmd-8-3441-2015
https://doaj.org/article/ffa16bd9a7874af38a2ee1586b661b11
geographic Canada
geographic_facet Canada
genre glacier*
genre_facet glacier*
op_source Geoscientific Model Development, Vol 8, Iss 10, Pp 3441-3470 (2015)
op_relation http://www.geosci-model-dev.net/8/3441/2015/gmd-8-3441-2015.pdf
https://doaj.org/toc/1991-959X
https://doaj.org/toc/1991-9603
1991-959X
1991-9603
doi:10.5194/gmd-8-3441-2015
https://doaj.org/article/ffa16bd9a7874af38a2ee1586b661b11
op_doi https://doi.org/10.5194/gmd-8-3441-2015
container_title Geoscientific Model Development
container_volume 8
container_issue 10
container_start_page 3441
op_container_end_page 3470
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