Patterns in nuclear and mitochondrial DNA reveal historical and recent isolation in the Black-tailed Godwit (Limosa limosa).
On the basis of morphological differences, three subspecies of Black-tailed Godwit (Limosa limosa) have been recognized (L. l. limosa, L. l. islandica and L. l. melanuroides). In previous studies mitochondrial DNA (mtDNA) sequence data showed minimal genetic divergence between the three subspecies a...
Published in: | PLoS ONE |
---|---|
Main Authors: | , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
Public Library of Science (PLoS)
2014
|
Subjects: | |
Online Access: | https://doi.org/10.1371/journal.pone.0083949 https://doaj.org/article/fd745cbfc893406c8c47382eb638e5dc |
id |
ftdoajarticles:oai:doaj.org/article:fd745cbfc893406c8c47382eb638e5dc |
---|---|
record_format |
openpolar |
spelling |
ftdoajarticles:oai:doaj.org/article:fd745cbfc893406c8c47382eb638e5dc 2023-05-15T16:51:33+02:00 Patterns in nuclear and mitochondrial DNA reveal historical and recent isolation in the Black-tailed Godwit (Limosa limosa). Krijn B Trimbos Camiel Doorenweerd Ken Kraaijeveld C J M Musters Niko M Groen Peter de Knijff Theunis Piersma Geert R de Snoo 2014-01-01T00:00:00Z https://doi.org/10.1371/journal.pone.0083949 https://doaj.org/article/fd745cbfc893406c8c47382eb638e5dc EN eng Public Library of Science (PLoS) https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24416186/?tool=EBI https://doaj.org/toc/1932-6203 1932-6203 doi:10.1371/journal.pone.0083949 https://doaj.org/article/fd745cbfc893406c8c47382eb638e5dc PLoS ONE, Vol 9, Iss 1, p e83949 (2014) Medicine R Science Q article 2014 ftdoajarticles https://doi.org/10.1371/journal.pone.0083949 2022-12-31T05:21:52Z On the basis of morphological differences, three subspecies of Black-tailed Godwit (Limosa limosa) have been recognized (L. l. limosa, L. l. islandica and L. l. melanuroides). In previous studies mitochondrial DNA (mtDNA) sequence data showed minimal genetic divergence between the three subspecies and an absence of sub-structuring within L. l. limosa. Here, population genetic structure and phylogeographic patterns have been analyzed using COI, HVR1 and HVR2 mtDNA sequence data as well as 12 microsatellite loci (nuDNA). The nuDNA data suggest genetic differentiation between L. l. limosa from Sweden and The Netherlands, between L. l. limosa and L. l. islandica, but not between L. l. limosa and L. l. melanuroides. However, the mtDNA data were not consistent with the nuDNA pattern. mtDNA did support a split between L. l. melanuroides and L. l. limosa/L. l. islandica and also demonstrated two L. l. limosa haplotype clusters that were not geographically isolated. This genetic structure can be explained by a scenario of isolation of L. l. melanuroides from L. l. limosa in Beringia during the Last Glacial Maximum. During the Pleistocene separation of L. l. islandica from L. l. limosa occurred, followed by colonization of Iceland by the L. l. islandica during the Holocene. Within L. l. limosa founder events, followed by population expansion, took place during the Holocene also. According to the patterns observed in both markers together and their geographic separation, we propose that the three traditional subspecies indeed represent three separate genetic units. Article in Journal/Newspaper Iceland Beringia black-tailed godwit Limosa limosa Directory of Open Access Journals: DOAJ Articles PLoS ONE 9 1 e83949 |
institution |
Open Polar |
collection |
Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
Medicine R Science Q |
spellingShingle |
Medicine R Science Q Krijn B Trimbos Camiel Doorenweerd Ken Kraaijeveld C J M Musters Niko M Groen Peter de Knijff Theunis Piersma Geert R de Snoo Patterns in nuclear and mitochondrial DNA reveal historical and recent isolation in the Black-tailed Godwit (Limosa limosa). |
topic_facet |
Medicine R Science Q |
description |
On the basis of morphological differences, three subspecies of Black-tailed Godwit (Limosa limosa) have been recognized (L. l. limosa, L. l. islandica and L. l. melanuroides). In previous studies mitochondrial DNA (mtDNA) sequence data showed minimal genetic divergence between the three subspecies and an absence of sub-structuring within L. l. limosa. Here, population genetic structure and phylogeographic patterns have been analyzed using COI, HVR1 and HVR2 mtDNA sequence data as well as 12 microsatellite loci (nuDNA). The nuDNA data suggest genetic differentiation between L. l. limosa from Sweden and The Netherlands, between L. l. limosa and L. l. islandica, but not between L. l. limosa and L. l. melanuroides. However, the mtDNA data were not consistent with the nuDNA pattern. mtDNA did support a split between L. l. melanuroides and L. l. limosa/L. l. islandica and also demonstrated two L. l. limosa haplotype clusters that were not geographically isolated. This genetic structure can be explained by a scenario of isolation of L. l. melanuroides from L. l. limosa in Beringia during the Last Glacial Maximum. During the Pleistocene separation of L. l. islandica from L. l. limosa occurred, followed by colonization of Iceland by the L. l. islandica during the Holocene. Within L. l. limosa founder events, followed by population expansion, took place during the Holocene also. According to the patterns observed in both markers together and their geographic separation, we propose that the three traditional subspecies indeed represent three separate genetic units. |
format |
Article in Journal/Newspaper |
author |
Krijn B Trimbos Camiel Doorenweerd Ken Kraaijeveld C J M Musters Niko M Groen Peter de Knijff Theunis Piersma Geert R de Snoo |
author_facet |
Krijn B Trimbos Camiel Doorenweerd Ken Kraaijeveld C J M Musters Niko M Groen Peter de Knijff Theunis Piersma Geert R de Snoo |
author_sort |
Krijn B Trimbos |
title |
Patterns in nuclear and mitochondrial DNA reveal historical and recent isolation in the Black-tailed Godwit (Limosa limosa). |
title_short |
Patterns in nuclear and mitochondrial DNA reveal historical and recent isolation in the Black-tailed Godwit (Limosa limosa). |
title_full |
Patterns in nuclear and mitochondrial DNA reveal historical and recent isolation in the Black-tailed Godwit (Limosa limosa). |
title_fullStr |
Patterns in nuclear and mitochondrial DNA reveal historical and recent isolation in the Black-tailed Godwit (Limosa limosa). |
title_full_unstemmed |
Patterns in nuclear and mitochondrial DNA reveal historical and recent isolation in the Black-tailed Godwit (Limosa limosa). |
title_sort |
patterns in nuclear and mitochondrial dna reveal historical and recent isolation in the black-tailed godwit (limosa limosa). |
publisher |
Public Library of Science (PLoS) |
publishDate |
2014 |
url |
https://doi.org/10.1371/journal.pone.0083949 https://doaj.org/article/fd745cbfc893406c8c47382eb638e5dc |
genre |
Iceland Beringia black-tailed godwit Limosa limosa |
genre_facet |
Iceland Beringia black-tailed godwit Limosa limosa |
op_source |
PLoS ONE, Vol 9, Iss 1, p e83949 (2014) |
op_relation |
https://www.ncbi.nlm.nih.gov/pmc/articles/pmid/24416186/?tool=EBI https://doaj.org/toc/1932-6203 1932-6203 doi:10.1371/journal.pone.0083949 https://doaj.org/article/fd745cbfc893406c8c47382eb638e5dc |
op_doi |
https://doi.org/10.1371/journal.pone.0083949 |
container_title |
PLoS ONE |
container_volume |
9 |
container_issue |
1 |
container_start_page |
e83949 |
_version_ |
1766041666934800384 |