Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas

Retinoic acid (RA) plays important roles in various biological processes in animals. RA signaling is mediated by two types of nuclear receptors, namely retinoic acid receptor (RAR) and retinoid x receptor (RXR), which regulate gene expression by binding to retinoic acid response elements (RAREs) in...

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Published in:International Journal of Molecular Sciences
Main Authors: Qianqian Jin, Chuncao Huo, Wenhao Yang, Kaidi Jin, Shuai Cai, Yanxin Zheng, Baoyu Huang, Lei Wei, Meiwei Zhang, Yijing Han, Xuekai Zhang, Yaqiong Liu, Xiaotong Wang
Format: Article in Journal/Newspaper
Language:English
Published: MDPI AG 2022
Subjects:
Online Access:https://doi.org/10.3390/ijms232112840
https://doaj.org/article/f727604790a64dd2b364248e6f07a7b7
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spelling ftdoajarticles:oai:doaj.org/article:f727604790a64dd2b364248e6f07a7b7 2023-05-15T15:58:12+02:00 Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas Qianqian Jin Chuncao Huo Wenhao Yang Kaidi Jin Shuai Cai Yanxin Zheng Baoyu Huang Lei Wei Meiwei Zhang Yijing Han Xuekai Zhang Yaqiong Liu Xiaotong Wang 2022-10-01T00:00:00Z https://doi.org/10.3390/ijms232112840 https://doaj.org/article/f727604790a64dd2b364248e6f07a7b7 EN eng MDPI AG https://www.mdpi.com/1422-0067/23/21/12840 https://doaj.org/toc/1661-6596 https://doaj.org/toc/1422-0067 doi:10.3390/ijms232112840 1422-0067 1661-6596 https://doaj.org/article/f727604790a64dd2b364248e6f07a7b7 International Journal of Molecular Sciences, Vol 23, Iss 12840, p 12840 (2022) retinoic acid retinoic acid receptors tyrosinase gene RARES Crassostrea gigas Biology (General) QH301-705.5 Chemistry QD1-999 article 2022 ftdoajarticles https://doi.org/10.3390/ijms232112840 2022-12-30T23:17:53Z Retinoic acid (RA) plays important roles in various biological processes in animals. RA signaling is mediated by two types of nuclear receptors, namely retinoic acid receptor (RAR) and retinoid x receptor (RXR), which regulate gene expression by binding to retinoic acid response elements (RAREs) in the promoters of target genes. Here, we explored the effect of all-trans retinoic acid (ATRA) on the Pacific oyster Crassostera gigas at the transcriptome level. A total of 586 differentially expressed genes (DEGs) were identified in C. gigas upon ATRA treatment, with 309 upregulated and 277 downregulated genes. Bioinformatic analysis revealed that ATRA affects the development, metabolism, reproduction, and immunity of C. gigas . Four tyrosinase genes, including Tyr-6 (LOC105331209), Tyr-9 (LOC105346503), Tyr-20 (LOC105330910), and Tyr-12 (LOC105320007), were upregulated by ATRA according to the transcriptome data and these results were verified by real-time quantitative polymerase chain reaction (RT-qPCR) analysis. In addition, increased expression of Tyr (a melanin-related TYR gene in C. gigas ) and Tyr-2 were detected after ATRA treatment. The yeast one-hybrid assay revealed the DNA-binding activity of the RA receptors Cg RAR and Cg RXR, and the interaction of Cg RAR with RARE present in the Tyr-2 promoter. These results provide evidence for the further studies on the role of ATRA and the mechanism of RA receptors in mollusks. Article in Journal/Newspaper Crassostrea gigas Pacific oyster Directory of Open Access Journals: DOAJ Articles Pacific International Journal of Molecular Sciences 23 21 12840
institution Open Polar
collection Directory of Open Access Journals: DOAJ Articles
op_collection_id ftdoajarticles
language English
topic retinoic acid
retinoic acid receptors
tyrosinase gene
RARES
Crassostrea gigas
Biology (General)
QH301-705.5
Chemistry
QD1-999
spellingShingle retinoic acid
retinoic acid receptors
tyrosinase gene
RARES
Crassostrea gigas
Biology (General)
QH301-705.5
Chemistry
QD1-999
Qianqian Jin
Chuncao Huo
Wenhao Yang
Kaidi Jin
Shuai Cai
Yanxin Zheng
Baoyu Huang
Lei Wei
Meiwei Zhang
Yijing Han
Xuekai Zhang
Yaqiong Liu
Xiaotong Wang
Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas
topic_facet retinoic acid
retinoic acid receptors
tyrosinase gene
RARES
Crassostrea gigas
Biology (General)
QH301-705.5
Chemistry
QD1-999
description Retinoic acid (RA) plays important roles in various biological processes in animals. RA signaling is mediated by two types of nuclear receptors, namely retinoic acid receptor (RAR) and retinoid x receptor (RXR), which regulate gene expression by binding to retinoic acid response elements (RAREs) in the promoters of target genes. Here, we explored the effect of all-trans retinoic acid (ATRA) on the Pacific oyster Crassostera gigas at the transcriptome level. A total of 586 differentially expressed genes (DEGs) were identified in C. gigas upon ATRA treatment, with 309 upregulated and 277 downregulated genes. Bioinformatic analysis revealed that ATRA affects the development, metabolism, reproduction, and immunity of C. gigas . Four tyrosinase genes, including Tyr-6 (LOC105331209), Tyr-9 (LOC105346503), Tyr-20 (LOC105330910), and Tyr-12 (LOC105320007), were upregulated by ATRA according to the transcriptome data and these results were verified by real-time quantitative polymerase chain reaction (RT-qPCR) analysis. In addition, increased expression of Tyr (a melanin-related TYR gene in C. gigas ) and Tyr-2 were detected after ATRA treatment. The yeast one-hybrid assay revealed the DNA-binding activity of the RA receptors Cg RAR and Cg RXR, and the interaction of Cg RAR with RARE present in the Tyr-2 promoter. These results provide evidence for the further studies on the role of ATRA and the mechanism of RA receptors in mollusks.
format Article in Journal/Newspaper
author Qianqian Jin
Chuncao Huo
Wenhao Yang
Kaidi Jin
Shuai Cai
Yanxin Zheng
Baoyu Huang
Lei Wei
Meiwei Zhang
Yijing Han
Xuekai Zhang
Yaqiong Liu
Xiaotong Wang
author_facet Qianqian Jin
Chuncao Huo
Wenhao Yang
Kaidi Jin
Shuai Cai
Yanxin Zheng
Baoyu Huang
Lei Wei
Meiwei Zhang
Yijing Han
Xuekai Zhang
Yaqiong Liu
Xiaotong Wang
author_sort Qianqian Jin
title Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas
title_short Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas
title_full Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas
title_fullStr Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas
title_full_unstemmed Regulation of Tyrosinase Gene Expression by Retinoic Acid Pathway in the Pacific Oyster Crassostrea gigas
title_sort regulation of tyrosinase gene expression by retinoic acid pathway in the pacific oyster crassostrea gigas
publisher MDPI AG
publishDate 2022
url https://doi.org/10.3390/ijms232112840
https://doaj.org/article/f727604790a64dd2b364248e6f07a7b7
geographic Pacific
geographic_facet Pacific
genre Crassostrea gigas
Pacific oyster
genre_facet Crassostrea gigas
Pacific oyster
op_source International Journal of Molecular Sciences, Vol 23, Iss 12840, p 12840 (2022)
op_relation https://www.mdpi.com/1422-0067/23/21/12840
https://doaj.org/toc/1661-6596
https://doaj.org/toc/1422-0067
doi:10.3390/ijms232112840
1422-0067
1661-6596
https://doaj.org/article/f727604790a64dd2b364248e6f07a7b7
op_doi https://doi.org/10.3390/ijms232112840
container_title International Journal of Molecular Sciences
container_volume 23
container_issue 21
container_start_page 12840
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