Contrasting Community Composition of Active Microbial Eukaryotes in Melt Ponds and Sea Water of the Arctic Ocean Revealed by High Throughput Sequencing

Melt ponds (MPs), form as the result of thawing of snow and sea ice in the summer, have lower albedo than the sea ice and are thus partly responsible for the polar amplification of global warming. Knowing the community composition of MP organisms is key to understanding their roles in the biogeochem...

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Published in:Frontiers in Microbiology
Main Authors: Dapeng Xu, Hejun Kong, Eun-Jin Yang, Xinran Li, Nianzhi Jiao, Alan Warren, Ying Wang, Youngju Lee, Jinyoung Jung, Sung-Ho Kang
Format: Article in Journal/Newspaper
Language:English
Published: Frontiers Media S.A. 2020
Subjects:
Online Access:https://doi.org/10.3389/fmicb.2020.01170
https://doaj.org/article/f71db601228047cdbbc4eeb2fbd38941
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spelling ftdoajarticles:oai:doaj.org/article:f71db601228047cdbbc4eeb2fbd38941 2023-05-15T13:11:42+02:00 Contrasting Community Composition of Active Microbial Eukaryotes in Melt Ponds and Sea Water of the Arctic Ocean Revealed by High Throughput Sequencing Dapeng Xu Hejun Kong Eun-Jin Yang Xinran Li Nianzhi Jiao Alan Warren Ying Wang Youngju Lee Jinyoung Jung Sung-Ho Kang 2020-06-01T00:00:00Z https://doi.org/10.3389/fmicb.2020.01170 https://doaj.org/article/f71db601228047cdbbc4eeb2fbd38941 EN eng Frontiers Media S.A. https://www.frontiersin.org/article/10.3389/fmicb.2020.01170/full https://doaj.org/toc/1664-302X 1664-302X doi:10.3389/fmicb.2020.01170 https://doaj.org/article/f71db601228047cdbbc4eeb2fbd38941 Frontiers in Microbiology, Vol 11 (2020) assembly mechanism community structure diversity high throughput cDNA sequencing protist 18S rRNA Microbiology QR1-502 article 2020 ftdoajarticles https://doi.org/10.3389/fmicb.2020.01170 2022-12-31T04:27:17Z Melt ponds (MPs), form as the result of thawing of snow and sea ice in the summer, have lower albedo than the sea ice and are thus partly responsible for the polar amplification of global warming. Knowing the community composition of MP organisms is key to understanding their roles in the biogeochemical cycles of nutrients and elements. However, the community composition of MP microbial eukaryotes has rarely been studied. In the present study, we assessed the microbial eukaryote biodiversity, community composition, and assembly processes in MPs and surface sea water (SW) using high throughput sequencing of 18S rRNA of size-fractionated samples. Alpha diversity estimates were lower in the MPs than SW across all size fractions. The community composition of MPs was significantly different from that of SW. The MP communities were dominated by members from Chrysophyceae, the ciliate classes Litostomatea and Spirotrichea, and the cercozoan groups Filosa-Thecofilosea. One open MP community was similar to SW communities, which was probably due to the advanced stage of development of the MP enabling the exchange of species between it and adjacent SW. High portions of shared species between MPs and SW may indicate the vigorous exchange of species between these two major types of environments in the Arctic Ocean. SW microbial eukaryote communities are mainly controlled by dispersal limitation whereas those of MP are mainly controlled by ecological drift. Article in Journal/Newspaper albedo Arctic Arctic Ocean Global warming Sea ice Directory of Open Access Journals: DOAJ Articles Arctic Arctic Ocean Frontiers in Microbiology 11
institution Open Polar
collection Directory of Open Access Journals: DOAJ Articles
op_collection_id ftdoajarticles
language English
topic assembly mechanism
community structure
diversity
high throughput cDNA sequencing
protist
18S rRNA
Microbiology
QR1-502
spellingShingle assembly mechanism
community structure
diversity
high throughput cDNA sequencing
protist
18S rRNA
Microbiology
QR1-502
Dapeng Xu
Hejun Kong
Eun-Jin Yang
Xinran Li
Nianzhi Jiao
Alan Warren
Ying Wang
Youngju Lee
Jinyoung Jung
Sung-Ho Kang
Contrasting Community Composition of Active Microbial Eukaryotes in Melt Ponds and Sea Water of the Arctic Ocean Revealed by High Throughput Sequencing
topic_facet assembly mechanism
community structure
diversity
high throughput cDNA sequencing
protist
18S rRNA
Microbiology
QR1-502
description Melt ponds (MPs), form as the result of thawing of snow and sea ice in the summer, have lower albedo than the sea ice and are thus partly responsible for the polar amplification of global warming. Knowing the community composition of MP organisms is key to understanding their roles in the biogeochemical cycles of nutrients and elements. However, the community composition of MP microbial eukaryotes has rarely been studied. In the present study, we assessed the microbial eukaryote biodiversity, community composition, and assembly processes in MPs and surface sea water (SW) using high throughput sequencing of 18S rRNA of size-fractionated samples. Alpha diversity estimates were lower in the MPs than SW across all size fractions. The community composition of MPs was significantly different from that of SW. The MP communities were dominated by members from Chrysophyceae, the ciliate classes Litostomatea and Spirotrichea, and the cercozoan groups Filosa-Thecofilosea. One open MP community was similar to SW communities, which was probably due to the advanced stage of development of the MP enabling the exchange of species between it and adjacent SW. High portions of shared species between MPs and SW may indicate the vigorous exchange of species between these two major types of environments in the Arctic Ocean. SW microbial eukaryote communities are mainly controlled by dispersal limitation whereas those of MP are mainly controlled by ecological drift.
format Article in Journal/Newspaper
author Dapeng Xu
Hejun Kong
Eun-Jin Yang
Xinran Li
Nianzhi Jiao
Alan Warren
Ying Wang
Youngju Lee
Jinyoung Jung
Sung-Ho Kang
author_facet Dapeng Xu
Hejun Kong
Eun-Jin Yang
Xinran Li
Nianzhi Jiao
Alan Warren
Ying Wang
Youngju Lee
Jinyoung Jung
Sung-Ho Kang
author_sort Dapeng Xu
title Contrasting Community Composition of Active Microbial Eukaryotes in Melt Ponds and Sea Water of the Arctic Ocean Revealed by High Throughput Sequencing
title_short Contrasting Community Composition of Active Microbial Eukaryotes in Melt Ponds and Sea Water of the Arctic Ocean Revealed by High Throughput Sequencing
title_full Contrasting Community Composition of Active Microbial Eukaryotes in Melt Ponds and Sea Water of the Arctic Ocean Revealed by High Throughput Sequencing
title_fullStr Contrasting Community Composition of Active Microbial Eukaryotes in Melt Ponds and Sea Water of the Arctic Ocean Revealed by High Throughput Sequencing
title_full_unstemmed Contrasting Community Composition of Active Microbial Eukaryotes in Melt Ponds and Sea Water of the Arctic Ocean Revealed by High Throughput Sequencing
title_sort contrasting community composition of active microbial eukaryotes in melt ponds and sea water of the arctic ocean revealed by high throughput sequencing
publisher Frontiers Media S.A.
publishDate 2020
url https://doi.org/10.3389/fmicb.2020.01170
https://doaj.org/article/f71db601228047cdbbc4eeb2fbd38941
geographic Arctic
Arctic Ocean
geographic_facet Arctic
Arctic Ocean
genre albedo
Arctic
Arctic Ocean
Global warming
Sea ice
genre_facet albedo
Arctic
Arctic Ocean
Global warming
Sea ice
op_source Frontiers in Microbiology, Vol 11 (2020)
op_relation https://www.frontiersin.org/article/10.3389/fmicb.2020.01170/full
https://doaj.org/toc/1664-302X
1664-302X
doi:10.3389/fmicb.2020.01170
https://doaj.org/article/f71db601228047cdbbc4eeb2fbd38941
op_doi https://doi.org/10.3389/fmicb.2020.01170
container_title Frontiers in Microbiology
container_volume 11
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