A new bird calicivirus detected in feces of cormorants
The incidence of reporting caliciviruses in wild birds is less common than in other animals, and the majority of cases remain unclassified. A strain of calicivirus was discovered in this study in the feces of cormorants collected at Xiamen Horticulture Expo Garden in 2021 and was named Cormcali01. T...
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ftdoajarticles:oai:doaj.org/article:f0df694ba561445aacfa1f47dc42fe8b 2024-09-15T18:32:34+00:00 A new bird calicivirus detected in feces of cormorants Yan Wu Chunying Lu Ran Zhao Yuyun He Jingjing Hou Yijie Sun Shixing Yang Zhaoying Qin Likai Ji Yan Wang Wen Zhang 2024-02-01T00:00:00Z https://doi.org/10.3389/av.2024.12515 https://doaj.org/article/f0df694ba561445aacfa1f47dc42fe8b EN eng Frontiers Media S.A. https://www.frontierspartnerships.org/articles/10.3389/av.2024.12515/full https://doaj.org/toc/1336-2305 1336-2305 doi:10.3389/av.2024.12515 https://doaj.org/article/f0df694ba561445aacfa1f47dc42fe8b Acta Virologica, Vol 68 (2024) calicivirus virome wild bird metagenomic phylogenetic analysis Biology (General) QH301-705.5 article 2024 ftdoajarticles https://doi.org/10.3389/av.2024.12515 2024-08-05T17:49:56Z The incidence of reporting caliciviruses in wild birds is less common than in other animals, and the majority of cases remain unclassified. A strain of calicivirus was discovered in this study in the feces of cormorants collected at Xiamen Horticulture Expo Garden in 2021 and was named Cormcali01. The genome of Cormcali01 was 8,561 bp in length which contained characteristic motifs present in other caliciviruses. Furthermore, it demonstrated a significant deviation from all existing calicivirus nucleotide sequences, exhibiting the highest amino acid identity (47.34%) to the unclassified Ruddy turnstone calicivirus A. A pairwise comparison of the VP1 protein showed that Cormcali01 had the highest amino acid identity of 43.90% with the unassigned Ruddy turnstone calicivirus A. Phylogenetic analysis demonstrated that VP1 of Cormcali01 clustered with unassigned caliciviruses. Therefore, based on phylogenetic analysis and pairwise comparison, Cormcali01 should be affiliated with the unassigned calicivirus, which were suggested to comprise a new calicivirus genus, the Sanovirus genus. After investigating the prevalence of Cormcali01, we discovered that 22.22% of fecal samples (10/45) were tested positive. These findings expand our understanding of the genetic variation of caliciviruses and provide valuable epidemiological information regarding a potential outbreak of calicivirus disease in birds. Article in Journal/Newspaper Ruddy Turnstone Directory of Open Access Journals: DOAJ Articles Acta Virologica 68 |
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Open Polar |
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Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
calicivirus virome wild bird metagenomic phylogenetic analysis Biology (General) QH301-705.5 |
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calicivirus virome wild bird metagenomic phylogenetic analysis Biology (General) QH301-705.5 Yan Wu Chunying Lu Ran Zhao Yuyun He Jingjing Hou Yijie Sun Shixing Yang Zhaoying Qin Likai Ji Yan Wang Wen Zhang A new bird calicivirus detected in feces of cormorants |
topic_facet |
calicivirus virome wild bird metagenomic phylogenetic analysis Biology (General) QH301-705.5 |
description |
The incidence of reporting caliciviruses in wild birds is less common than in other animals, and the majority of cases remain unclassified. A strain of calicivirus was discovered in this study in the feces of cormorants collected at Xiamen Horticulture Expo Garden in 2021 and was named Cormcali01. The genome of Cormcali01 was 8,561 bp in length which contained characteristic motifs present in other caliciviruses. Furthermore, it demonstrated a significant deviation from all existing calicivirus nucleotide sequences, exhibiting the highest amino acid identity (47.34%) to the unclassified Ruddy turnstone calicivirus A. A pairwise comparison of the VP1 protein showed that Cormcali01 had the highest amino acid identity of 43.90% with the unassigned Ruddy turnstone calicivirus A. Phylogenetic analysis demonstrated that VP1 of Cormcali01 clustered with unassigned caliciviruses. Therefore, based on phylogenetic analysis and pairwise comparison, Cormcali01 should be affiliated with the unassigned calicivirus, which were suggested to comprise a new calicivirus genus, the Sanovirus genus. After investigating the prevalence of Cormcali01, we discovered that 22.22% of fecal samples (10/45) were tested positive. These findings expand our understanding of the genetic variation of caliciviruses and provide valuable epidemiological information regarding a potential outbreak of calicivirus disease in birds. |
format |
Article in Journal/Newspaper |
author |
Yan Wu Chunying Lu Ran Zhao Yuyun He Jingjing Hou Yijie Sun Shixing Yang Zhaoying Qin Likai Ji Yan Wang Wen Zhang |
author_facet |
Yan Wu Chunying Lu Ran Zhao Yuyun He Jingjing Hou Yijie Sun Shixing Yang Zhaoying Qin Likai Ji Yan Wang Wen Zhang |
author_sort |
Yan Wu |
title |
A new bird calicivirus detected in feces of cormorants |
title_short |
A new bird calicivirus detected in feces of cormorants |
title_full |
A new bird calicivirus detected in feces of cormorants |
title_fullStr |
A new bird calicivirus detected in feces of cormorants |
title_full_unstemmed |
A new bird calicivirus detected in feces of cormorants |
title_sort |
new bird calicivirus detected in feces of cormorants |
publisher |
Frontiers Media S.A. |
publishDate |
2024 |
url |
https://doi.org/10.3389/av.2024.12515 https://doaj.org/article/f0df694ba561445aacfa1f47dc42fe8b |
genre |
Ruddy Turnstone |
genre_facet |
Ruddy Turnstone |
op_source |
Acta Virologica, Vol 68 (2024) |
op_relation |
https://www.frontierspartnerships.org/articles/10.3389/av.2024.12515/full https://doaj.org/toc/1336-2305 1336-2305 doi:10.3389/av.2024.12515 https://doaj.org/article/f0df694ba561445aacfa1f47dc42fe8b |
op_doi |
https://doi.org/10.3389/av.2024.12515 |
container_title |
Acta Virologica |
container_volume |
68 |
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1810474316351930368 |