Biosynthetic Potential of a Novel Antarctic Actinobacterium Marisediminicola antarctica ZS314 T Revealed by Genomic Data Mining and Pigment Characterization

• Published in: Marine Drugs
• Main Authors: Li Liao, Shiyuan Su, Bin Zhao, Chengqi Fan, Jin Zhang, Huirong Li, Bo Chen
• Format: Article in Journal/Newspaper
• Language: English
• Published: MDPI AG 2019
• Subjects: Marisediminicola; Antarctica; carotenoid; actinobacteria; natural products; gene cluster; Biology (General); QH301-705.5; Antarctic; East Antarctica; Antarc*
• Online Access: https://doi.org/10.3390/md17070388; https://doaj.org/article/ede4fd42669649d8a950b7eb307acf85

Rare actinobacterial species are considered as potential resources of new natural products. Marisediminicola antarctica ZS314 T is the only type strain of the novel actinobacterial genus Marisediminicola isolated from intertidal sediments in East Antarctica. The strain ZS314 T was able to produce reddish orange pigments at low temperatures, showing characteristics of carotenoids. To understand the biosynthetic potential of this strain, the genome was completely sequenced for data mining. The complete genome had 3,352,609 base pairs (bp), much smaller than most genomes of actinomycetes. Five biosynthetic gene clusters (BGCs) were predicted in the genome, including a gene cluster responsible for the biosynthesis of C50 carotenoid, and four additional BGCs of unknown oligosaccharide, salinixanthin, alkylresorcinol derivatives, and NRPS (non-ribosomal peptide synthetase) or amino acid-derived compounds. Further experimental characterization indicated that the strain may produce C.p.450-like carotenoids, supporting the genomic data analysis. A new xanthorhodopsin gene was discovered along with the analysis of the salinixanthin biosynthetic gene cluster. Since little is known about this genus, this work improves our understanding of its biosynthetic potential and provides opportunities for further investigation of natural products and strategies for adaptation to the extreme Antarctic environment.