Geolocation of a demersal fish (Pacific cod) in a high-latitude island chain (Aleutian Islands, Alaska)
Abstract Background Fish geolocation methods are most effective when they are customized to account for species behavior and study area characteristics. Here, we provide an example of customizing a hidden Markov model (HMM) for reconstructing movement pathways of a high-latitude demersal fish specie...
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ftdoajarticles:oai:doaj.org/article:e7bc487276bc4442bd8655b422947288 2023-08-27T04:12:33+02:00 Geolocation of a demersal fish (Pacific cod) in a high-latitude island chain (Aleutian Islands, Alaska) Julie K. Nielsen David R. Bryan Kimberly M. Rand Martin C. Arostegui Camrin D. Braun Benjamin Galuardi Susanne F. McDermott 2023-07-01T00:00:00Z https://doi.org/10.1186/s40317-023-00340-3 https://doaj.org/article/e7bc487276bc4442bd8655b422947288 EN eng BMC https://doi.org/10.1186/s40317-023-00340-3 https://doaj.org/toc/2050-3385 doi:10.1186/s40317-023-00340-3 2050-3385 https://doaj.org/article/e7bc487276bc4442bd8655b422947288 Animal Biotelemetry, Vol 11, Iss 1, Pp 1-22 (2023) Geolocation Hidden Markov model Fish migration Satellite tags Pop-up Satellite Archival Tags Viterbi algorithm Ecology QH540-549.5 Animal biochemistry QP501-801 article 2023 ftdoajarticles https://doi.org/10.1186/s40317-023-00340-3 2023-08-06T00:49:22Z Abstract Background Fish geolocation methods are most effective when they are customized to account for species behavior and study area characteristics. Here, we provide an example of customizing a hidden Markov model (HMM) for reconstructing movement pathways of a high-latitude demersal fish species in a remote island chain using Pop-up Satellite Archival Tag (PSAT) data. Adult Pacific cod were tagged with PSATs while occupying winter spawning grounds in the Aleutian Islands in February 2019. We adapted a demersal fish application of the HMM to (1) add light-based longitude to the data likelihood model, (2) account for possible off-bottom behavior of demersal fishes in the maximum daily depth likelihood, and (3) modify the model framework to accommodate convoluted island topography in the study area. A simulation study was conducted to explore the two primary modifications to the model framework, reflecting boundary for the movement kernel and the Viterbi method of pathway reconstruction, under known conditions. Results Geolocation was performed on satellite-transmitted and detailed archival data sets from 6 adult Pacific cod at liberty for 21–277 days. Migration from winter spawning to summer foraging areas (range 60–395 km) was detected for the 4 tagged fish that were at liberty for more than 90 days. Light-based longitude was the primary geolocation variable for detecting migrations with precision (root mean square error) estimates of 0.56 degrees during winter and 1.3 degrees during the summer. Simulation studies confirmed the effectiveness of model framework modifications and generated guidelines for use in specific applications. Conclusions This study demonstrates that post-spawning migrations of Pacific cod in the Aleutian Islands can be detected and characterized using PSAT data. Initial insights into migrations, summer foraging areas, and associated development of appropriate analysis tools will support future Pacific cod movement studies in the Aleutian Islands as well as other regions of Alaska. The ... Article in Journal/Newspaper Alaska Aleutian Islands Directory of Open Access Journals: DOAJ Articles Pacific Animal Biotelemetry 11 1 |
institution |
Open Polar |
collection |
Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
Geolocation Hidden Markov model Fish migration Satellite tags Pop-up Satellite Archival Tags Viterbi algorithm Ecology QH540-549.5 Animal biochemistry QP501-801 |
spellingShingle |
Geolocation Hidden Markov model Fish migration Satellite tags Pop-up Satellite Archival Tags Viterbi algorithm Ecology QH540-549.5 Animal biochemistry QP501-801 Julie K. Nielsen David R. Bryan Kimberly M. Rand Martin C. Arostegui Camrin D. Braun Benjamin Galuardi Susanne F. McDermott Geolocation of a demersal fish (Pacific cod) in a high-latitude island chain (Aleutian Islands, Alaska) |
topic_facet |
Geolocation Hidden Markov model Fish migration Satellite tags Pop-up Satellite Archival Tags Viterbi algorithm Ecology QH540-549.5 Animal biochemistry QP501-801 |
description |
Abstract Background Fish geolocation methods are most effective when they are customized to account for species behavior and study area characteristics. Here, we provide an example of customizing a hidden Markov model (HMM) for reconstructing movement pathways of a high-latitude demersal fish species in a remote island chain using Pop-up Satellite Archival Tag (PSAT) data. Adult Pacific cod were tagged with PSATs while occupying winter spawning grounds in the Aleutian Islands in February 2019. We adapted a demersal fish application of the HMM to (1) add light-based longitude to the data likelihood model, (2) account for possible off-bottom behavior of demersal fishes in the maximum daily depth likelihood, and (3) modify the model framework to accommodate convoluted island topography in the study area. A simulation study was conducted to explore the two primary modifications to the model framework, reflecting boundary for the movement kernel and the Viterbi method of pathway reconstruction, under known conditions. Results Geolocation was performed on satellite-transmitted and detailed archival data sets from 6 adult Pacific cod at liberty for 21–277 days. Migration from winter spawning to summer foraging areas (range 60–395 km) was detected for the 4 tagged fish that were at liberty for more than 90 days. Light-based longitude was the primary geolocation variable for detecting migrations with precision (root mean square error) estimates of 0.56 degrees during winter and 1.3 degrees during the summer. Simulation studies confirmed the effectiveness of model framework modifications and generated guidelines for use in specific applications. Conclusions This study demonstrates that post-spawning migrations of Pacific cod in the Aleutian Islands can be detected and characterized using PSAT data. Initial insights into migrations, summer foraging areas, and associated development of appropriate analysis tools will support future Pacific cod movement studies in the Aleutian Islands as well as other regions of Alaska. The ... |
format |
Article in Journal/Newspaper |
author |
Julie K. Nielsen David R. Bryan Kimberly M. Rand Martin C. Arostegui Camrin D. Braun Benjamin Galuardi Susanne F. McDermott |
author_facet |
Julie K. Nielsen David R. Bryan Kimberly M. Rand Martin C. Arostegui Camrin D. Braun Benjamin Galuardi Susanne F. McDermott |
author_sort |
Julie K. Nielsen |
title |
Geolocation of a demersal fish (Pacific cod) in a high-latitude island chain (Aleutian Islands, Alaska) |
title_short |
Geolocation of a demersal fish (Pacific cod) in a high-latitude island chain (Aleutian Islands, Alaska) |
title_full |
Geolocation of a demersal fish (Pacific cod) in a high-latitude island chain (Aleutian Islands, Alaska) |
title_fullStr |
Geolocation of a demersal fish (Pacific cod) in a high-latitude island chain (Aleutian Islands, Alaska) |
title_full_unstemmed |
Geolocation of a demersal fish (Pacific cod) in a high-latitude island chain (Aleutian Islands, Alaska) |
title_sort |
geolocation of a demersal fish (pacific cod) in a high-latitude island chain (aleutian islands, alaska) |
publisher |
BMC |
publishDate |
2023 |
url |
https://doi.org/10.1186/s40317-023-00340-3 https://doaj.org/article/e7bc487276bc4442bd8655b422947288 |
geographic |
Pacific |
geographic_facet |
Pacific |
genre |
Alaska Aleutian Islands |
genre_facet |
Alaska Aleutian Islands |
op_source |
Animal Biotelemetry, Vol 11, Iss 1, Pp 1-22 (2023) |
op_relation |
https://doi.org/10.1186/s40317-023-00340-3 https://doaj.org/toc/2050-3385 doi:10.1186/s40317-023-00340-3 2050-3385 https://doaj.org/article/e7bc487276bc4442bd8655b422947288 |
op_doi |
https://doi.org/10.1186/s40317-023-00340-3 |
container_title |
Animal Biotelemetry |
container_volume |
11 |
container_issue |
1 |
_version_ |
1775356845440892928 |