The Genome Assembly and Annotation of the Southern Elephant Seal Mirounga leonina
The southern elephant seal Mirounga leonina is the largest phocid seal and one of the two species of elephant seals. They are listed as ‘least concern’ by the International Union for Conservation of Nature (IUCN) Red List of Threatened Species 2015. Here, we have assembled the reference genome for M...
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ftdoajarticles:oai:doaj.org/article:e5b4ff663125477f9a6681dff0752b84 2023-05-15T16:05:05+02:00 The Genome Assembly and Annotation of the Southern Elephant Seal Mirounga leonina Bo-Mi Kim Yoon Jin Lee Jeong-Hoon Kim Jin-Hyoung Kim Seunghyun Kang Euna Jo Seung Jae Lee Jun Hyuck Lee Young Min Chi Hyun Park 2020-02-01T00:00:00Z https://doi.org/10.3390/genes11020160 https://doaj.org/article/e5b4ff663125477f9a6681dff0752b84 EN eng MDPI AG https://www.mdpi.com/2073-4425/11/2/160 https://doaj.org/toc/2073-4425 2073-4425 doi:10.3390/genes11020160 https://doaj.org/article/e5b4ff663125477f9a6681dff0752b84 Genes, Vol 11, Iss 2, p 160 (2020) southern elephant seal mirounga leonina genome assembly: annotation: 10× genomics chromium technology Genetics QH426-470 article 2020 ftdoajarticles https://doi.org/10.3390/genes11020160 2022-12-31T07:10:55Z The southern elephant seal Mirounga leonina is the largest phocid seal and one of the two species of elephant seals. They are listed as ‘least concern’ by the International Union for Conservation of Nature (IUCN) Red List of Threatened Species 2015. Here, we have assembled the reference genome for M. leonina using the 10× chromium sequencing platform. The final genome assembly of M. leonina was 2.42 Gb long, with a contig N50 length of 54 Mb and a maximum length of 111.6 Mb. The M. leonina genome contained 20,457 predicted protein-coding genes and possessed 41.51% repeated sequences. The completeness of the M. leonina genome was evaluated using benchmarking universal single-copy orthologous genes (BUSCOs): the assembly was highly complete, containing 95.6% of the core set of mammalian genes. The high-quality genomic information on M. leonina will be essential for further understanding of adaptive metabolism upon repeated breath-hold dives and the exploration of molecular mechanisms contributing to its unique biochemical and physiological characteristics. The southern elephant seal genome project was deposited at NCBI (National Center for Biotechnology Information) under BioProject number PRJNA587380. Article in Journal/Newspaper Elephant Seal Elephant Seals Mirounga leonina Southern Elephant Seal Directory of Open Access Journals: DOAJ Articles Genes 11 2 160 |
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Directory of Open Access Journals: DOAJ Articles |
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ftdoajarticles |
language |
English |
topic |
southern elephant seal mirounga leonina genome assembly: annotation: 10× genomics chromium technology Genetics QH426-470 |
spellingShingle |
southern elephant seal mirounga leonina genome assembly: annotation: 10× genomics chromium technology Genetics QH426-470 Bo-Mi Kim Yoon Jin Lee Jeong-Hoon Kim Jin-Hyoung Kim Seunghyun Kang Euna Jo Seung Jae Lee Jun Hyuck Lee Young Min Chi Hyun Park The Genome Assembly and Annotation of the Southern Elephant Seal Mirounga leonina |
topic_facet |
southern elephant seal mirounga leonina genome assembly: annotation: 10× genomics chromium technology Genetics QH426-470 |
description |
The southern elephant seal Mirounga leonina is the largest phocid seal and one of the two species of elephant seals. They are listed as ‘least concern’ by the International Union for Conservation of Nature (IUCN) Red List of Threatened Species 2015. Here, we have assembled the reference genome for M. leonina using the 10× chromium sequencing platform. The final genome assembly of M. leonina was 2.42 Gb long, with a contig N50 length of 54 Mb and a maximum length of 111.6 Mb. The M. leonina genome contained 20,457 predicted protein-coding genes and possessed 41.51% repeated sequences. The completeness of the M. leonina genome was evaluated using benchmarking universal single-copy orthologous genes (BUSCOs): the assembly was highly complete, containing 95.6% of the core set of mammalian genes. The high-quality genomic information on M. leonina will be essential for further understanding of adaptive metabolism upon repeated breath-hold dives and the exploration of molecular mechanisms contributing to its unique biochemical and physiological characteristics. The southern elephant seal genome project was deposited at NCBI (National Center for Biotechnology Information) under BioProject number PRJNA587380. |
format |
Article in Journal/Newspaper |
author |
Bo-Mi Kim Yoon Jin Lee Jeong-Hoon Kim Jin-Hyoung Kim Seunghyun Kang Euna Jo Seung Jae Lee Jun Hyuck Lee Young Min Chi Hyun Park |
author_facet |
Bo-Mi Kim Yoon Jin Lee Jeong-Hoon Kim Jin-Hyoung Kim Seunghyun Kang Euna Jo Seung Jae Lee Jun Hyuck Lee Young Min Chi Hyun Park |
author_sort |
Bo-Mi Kim |
title |
The Genome Assembly and Annotation of the Southern Elephant Seal Mirounga leonina |
title_short |
The Genome Assembly and Annotation of the Southern Elephant Seal Mirounga leonina |
title_full |
The Genome Assembly and Annotation of the Southern Elephant Seal Mirounga leonina |
title_fullStr |
The Genome Assembly and Annotation of the Southern Elephant Seal Mirounga leonina |
title_full_unstemmed |
The Genome Assembly and Annotation of the Southern Elephant Seal Mirounga leonina |
title_sort |
genome assembly and annotation of the southern elephant seal mirounga leonina |
publisher |
MDPI AG |
publishDate |
2020 |
url |
https://doi.org/10.3390/genes11020160 https://doaj.org/article/e5b4ff663125477f9a6681dff0752b84 |
genre |
Elephant Seal Elephant Seals Mirounga leonina Southern Elephant Seal |
genre_facet |
Elephant Seal Elephant Seals Mirounga leonina Southern Elephant Seal |
op_source |
Genes, Vol 11, Iss 2, p 160 (2020) |
op_relation |
https://www.mdpi.com/2073-4425/11/2/160 https://doaj.org/toc/2073-4425 2073-4425 doi:10.3390/genes11020160 https://doaj.org/article/e5b4ff663125477f9a6681dff0752b84 |
op_doi |
https://doi.org/10.3390/genes11020160 |
container_title |
Genes |
container_volume |
11 |
container_issue |
2 |
container_start_page |
160 |
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1766400740272635904 |