Soil microbiomes of reclaimed and abandoned mines of the Yamal region
Here we investigate the microbiomes of the soil samples from the Yamal Peninsula (the surroundings of Salekhard city, Russian Federation) using a high-throughput sequencing approach. The main goal was to investigate the impact of mining on soils within the following regeneration, both during the rec...
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Polish Academy of Sciences
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ftdoajarticles:oai:doaj.org/article:e07360c1e89e4baeb7e26c353bee82e3 2023-05-15T15:08:27+02:00 Soil microbiomes of reclaimed and abandoned mines of the Yamal region Pershina Elizaveta Ivanova Ekaterina Kimeklis Anastasia Zverev Alexey Kichko Arina Aksenova Tatiana Andronov Evgeny Abakumov Evgeny 2020-02-01T00:00:00Z https://doi.org/10.24425/ppr.2020.132571 https://doaj.org/article/e07360c1e89e4baeb7e26c353bee82e3 EN eng Polish Academy of Sciences http://journals.pan.pl/dlibra/publication/132571/edition/115835/content https://doaj.org/toc/2081-8262 doi:10.24425/ppr.2020.132571 2081-8262 https://doaj.org/article/e07360c1e89e4baeb7e26c353bee82e3 Polish Polar Research, Vol 41, Iss 1, Pp 95-114 (2020) arctic yamal peninsula microbiome soil high-throughput sequencing 16s rrna qpcr mining reclamation Geology QE1-996.5 article 2020 ftdoajarticles https://doi.org/10.24425/ppr.2020.132571 2022-12-31T08:50:22Z Here we investigate the microbiomes of the soil samples from the Yamal Peninsula (the surroundings of Salekhard city, Russian Federation) using a high-throughput sequencing approach. The main goal was to investigate the impact of mining on soils within the following regeneration, both during the reclamation practice and natural self-growth. Several quarries were studied, engaged in sand, clay and chromatic ores mining. The taxonomic analysis of the soil microbiomes revealed 50 bacterial and archaeal phyla; among the dominant phyla were: Proteobacteria, Actinobacteria, Acidobacteria, Chroloflexi, Gemmatimonadetes, Verrucomicrobia, Planctomycetes, Bacteroidetes, AD3, and Nitrospirae. Compared to the typical tundra soil, which was chosen as a control, the disturbed soils had increased biodiversity and total counts for soil bacteria, archaea, and fungi, especially in the cryosolic horizon. The different mining strategies caused significantly different transformations of soil microbiomes, which was less pronounced for self-growth compared to reclaimed quarries. This isolation of the reclaimed quarry was mainly associated with the increase of the amount of acidobacteria (fam. Koribacteraceae and Acidobacteriaceae and order Ellin6513), some proteobacterial taxa (fam. Syntrophobacteraceae), and Chloroflexi (fam. Thermogemmatisporaceae). The study also revealed bacteria, which tend to be specific for marine tundra environments: gemmatimonadetes from the order N1423WL and Chloroflexi bacteria from the order Gitt-GS-136. Article in Journal/Newspaper Arctic Polar Research Tundra Yamal Peninsula Directory of Open Access Journals: DOAJ Articles Arctic Salekhard ENVELOPE(66.602,66.602,66.530,66.530) Yamal Peninsula ENVELOPE(69.873,69.873,70.816,70.816) |
institution |
Open Polar |
collection |
Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
arctic yamal peninsula microbiome soil high-throughput sequencing 16s rrna qpcr mining reclamation Geology QE1-996.5 |
spellingShingle |
arctic yamal peninsula microbiome soil high-throughput sequencing 16s rrna qpcr mining reclamation Geology QE1-996.5 Pershina Elizaveta Ivanova Ekaterina Kimeklis Anastasia Zverev Alexey Kichko Arina Aksenova Tatiana Andronov Evgeny Abakumov Evgeny Soil microbiomes of reclaimed and abandoned mines of the Yamal region |
topic_facet |
arctic yamal peninsula microbiome soil high-throughput sequencing 16s rrna qpcr mining reclamation Geology QE1-996.5 |
description |
Here we investigate the microbiomes of the soil samples from the Yamal Peninsula (the surroundings of Salekhard city, Russian Federation) using a high-throughput sequencing approach. The main goal was to investigate the impact of mining on soils within the following regeneration, both during the reclamation practice and natural self-growth. Several quarries were studied, engaged in sand, clay and chromatic ores mining. The taxonomic analysis of the soil microbiomes revealed 50 bacterial and archaeal phyla; among the dominant phyla were: Proteobacteria, Actinobacteria, Acidobacteria, Chroloflexi, Gemmatimonadetes, Verrucomicrobia, Planctomycetes, Bacteroidetes, AD3, and Nitrospirae. Compared to the typical tundra soil, which was chosen as a control, the disturbed soils had increased biodiversity and total counts for soil bacteria, archaea, and fungi, especially in the cryosolic horizon. The different mining strategies caused significantly different transformations of soil microbiomes, which was less pronounced for self-growth compared to reclaimed quarries. This isolation of the reclaimed quarry was mainly associated with the increase of the amount of acidobacteria (fam. Koribacteraceae and Acidobacteriaceae and order Ellin6513), some proteobacterial taxa (fam. Syntrophobacteraceae), and Chloroflexi (fam. Thermogemmatisporaceae). The study also revealed bacteria, which tend to be specific for marine tundra environments: gemmatimonadetes from the order N1423WL and Chloroflexi bacteria from the order Gitt-GS-136. |
format |
Article in Journal/Newspaper |
author |
Pershina Elizaveta Ivanova Ekaterina Kimeklis Anastasia Zverev Alexey Kichko Arina Aksenova Tatiana Andronov Evgeny Abakumov Evgeny |
author_facet |
Pershina Elizaveta Ivanova Ekaterina Kimeklis Anastasia Zverev Alexey Kichko Arina Aksenova Tatiana Andronov Evgeny Abakumov Evgeny |
author_sort |
Pershina Elizaveta |
title |
Soil microbiomes of reclaimed and abandoned mines of the Yamal region |
title_short |
Soil microbiomes of reclaimed and abandoned mines of the Yamal region |
title_full |
Soil microbiomes of reclaimed and abandoned mines of the Yamal region |
title_fullStr |
Soil microbiomes of reclaimed and abandoned mines of the Yamal region |
title_full_unstemmed |
Soil microbiomes of reclaimed and abandoned mines of the Yamal region |
title_sort |
soil microbiomes of reclaimed and abandoned mines of the yamal region |
publisher |
Polish Academy of Sciences |
publishDate |
2020 |
url |
https://doi.org/10.24425/ppr.2020.132571 https://doaj.org/article/e07360c1e89e4baeb7e26c353bee82e3 |
long_lat |
ENVELOPE(66.602,66.602,66.530,66.530) ENVELOPE(69.873,69.873,70.816,70.816) |
geographic |
Arctic Salekhard Yamal Peninsula |
geographic_facet |
Arctic Salekhard Yamal Peninsula |
genre |
Arctic Polar Research Tundra Yamal Peninsula |
genre_facet |
Arctic Polar Research Tundra Yamal Peninsula |
op_source |
Polish Polar Research, Vol 41, Iss 1, Pp 95-114 (2020) |
op_relation |
http://journals.pan.pl/dlibra/publication/132571/edition/115835/content https://doaj.org/toc/2081-8262 doi:10.24425/ppr.2020.132571 2081-8262 https://doaj.org/article/e07360c1e89e4baeb7e26c353bee82e3 |
op_doi |
https://doi.org/10.24425/ppr.2020.132571 |
_version_ |
1766339808298270720 |