Integrated operational taxonomic units (IOTUs) in echolocating bats: a bridge between molecular and traditional taxonomy.

BACKGROUND: Nowadays, molecular techniques are widespread tools for the identification of biological entities. However, until very few years ago, their application to taxonomy provoked intense debates between traditional and molecular taxonomists. To prevent every kind of disagreement, it is essenti...

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Published in:PLoS ONE
Main Authors: Andrea Galimberti, Martina Spada, Danilo Russo, Mauro Mucedda, Paolo Agnelli, Angelica Crottini, Emanuele Ferri, Adriano Martinoli, Maurizio Casiraghi
Format: Article in Journal/Newspaper
Language:English
Published: Public Library of Science (PLoS) 2012
Subjects:
R
Q
Online Access:https://doi.org/10.1371/journal.pone.0040122
https://doaj.org/article/dde7eb57f1f744cabd364e4e3ea515ad
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spelling ftdoajarticles:oai:doaj.org/article:dde7eb57f1f744cabd364e4e3ea515ad 2023-05-15T17:13:47+02:00 Integrated operational taxonomic units (IOTUs) in echolocating bats: a bridge between molecular and traditional taxonomy. Andrea Galimberti Martina Spada Danilo Russo Mauro Mucedda Paolo Agnelli Angelica Crottini Emanuele Ferri Adriano Martinoli Maurizio Casiraghi 2012-01-01T00:00:00Z https://doi.org/10.1371/journal.pone.0040122 https://doaj.org/article/dde7eb57f1f744cabd364e4e3ea515ad EN eng Public Library of Science (PLoS) http://europepmc.org/articles/PMC3386196?pdf=render https://doaj.org/toc/1932-6203 1932-6203 doi:10.1371/journal.pone.0040122 https://doaj.org/article/dde7eb57f1f744cabd364e4e3ea515ad PLoS ONE, Vol 7, Iss 6, p e40122 (2012) Medicine R Science Q article 2012 ftdoajarticles https://doi.org/10.1371/journal.pone.0040122 2022-12-31T16:00:59Z BACKGROUND: Nowadays, molecular techniques are widespread tools for the identification of biological entities. However, until very few years ago, their application to taxonomy provoked intense debates between traditional and molecular taxonomists. To prevent every kind of disagreement, it is essential to standardize taxonomic definitions. Along these lines, we introduced the concept of Integrated Operational Taxonomic Unit (IOTU). IOTUs come from the concept of Operational Taxonomic Unit (OTU) and paralleled the Molecular Operational Taxonomic Unit (MOTU). The latter is largely used as a standard in many molecular-based works (even if not always explicitly formalized). However, while MOTUs are assigned solely on molecular variation criteria, IOTUs are identified from patterns of molecular variation that are supported by at least one more taxonomic characteristic. METHODOLOGY/PRINCIPAL FINDINGS: We tested the use of IOTUs on the widest DNA barcoding dataset of Italian echolocating bats species ever assembled (i.e. 31 species, 209 samples). We identified 31 molecular entities, 26 of which corresponded to the morphologically assigned species, two MOTUs and three IOTUs. Interestingly, we found three IOTUs in Myotis nattereri, one of which is a newly described lineage found only in central and southern Italy. In addition, we found a level of molecular variability within four vespertilionid species deserving further analyses. According to our scheme two of them (i.e. M.bechsteinii and Plecotus auritus) should be ranked as unconfirmed candidate species (UCS). CONCLUSIONS/SIGNIFICANCE: From a systematic point of view, IOTUs are more informative than the general concept of OTUs and the more recent MOTUs. According to information content, IOTUs are closer to species, although it is important to underline that IOTUs are not species. Overall, the use of a more precise panel of taxonomic entities increases the clarity in the systematic field and has the potential to fill the gaps between modern and traditional taxonomy. Article in Journal/Newspaper Myotis nattereri Directory of Open Access Journals: DOAJ Articles PLoS ONE 7 6 e40122
institution Open Polar
collection Directory of Open Access Journals: DOAJ Articles
op_collection_id ftdoajarticles
language English
topic Medicine
R
Science
Q
spellingShingle Medicine
R
Science
Q
Andrea Galimberti
Martina Spada
Danilo Russo
Mauro Mucedda
Paolo Agnelli
Angelica Crottini
Emanuele Ferri
Adriano Martinoli
Maurizio Casiraghi
Integrated operational taxonomic units (IOTUs) in echolocating bats: a bridge between molecular and traditional taxonomy.
topic_facet Medicine
R
Science
Q
description BACKGROUND: Nowadays, molecular techniques are widespread tools for the identification of biological entities. However, until very few years ago, their application to taxonomy provoked intense debates between traditional and molecular taxonomists. To prevent every kind of disagreement, it is essential to standardize taxonomic definitions. Along these lines, we introduced the concept of Integrated Operational Taxonomic Unit (IOTU). IOTUs come from the concept of Operational Taxonomic Unit (OTU) and paralleled the Molecular Operational Taxonomic Unit (MOTU). The latter is largely used as a standard in many molecular-based works (even if not always explicitly formalized). However, while MOTUs are assigned solely on molecular variation criteria, IOTUs are identified from patterns of molecular variation that are supported by at least one more taxonomic characteristic. METHODOLOGY/PRINCIPAL FINDINGS: We tested the use of IOTUs on the widest DNA barcoding dataset of Italian echolocating bats species ever assembled (i.e. 31 species, 209 samples). We identified 31 molecular entities, 26 of which corresponded to the morphologically assigned species, two MOTUs and three IOTUs. Interestingly, we found three IOTUs in Myotis nattereri, one of which is a newly described lineage found only in central and southern Italy. In addition, we found a level of molecular variability within four vespertilionid species deserving further analyses. According to our scheme two of them (i.e. M.bechsteinii and Plecotus auritus) should be ranked as unconfirmed candidate species (UCS). CONCLUSIONS/SIGNIFICANCE: From a systematic point of view, IOTUs are more informative than the general concept of OTUs and the more recent MOTUs. According to information content, IOTUs are closer to species, although it is important to underline that IOTUs are not species. Overall, the use of a more precise panel of taxonomic entities increases the clarity in the systematic field and has the potential to fill the gaps between modern and traditional taxonomy.
format Article in Journal/Newspaper
author Andrea Galimberti
Martina Spada
Danilo Russo
Mauro Mucedda
Paolo Agnelli
Angelica Crottini
Emanuele Ferri
Adriano Martinoli
Maurizio Casiraghi
author_facet Andrea Galimberti
Martina Spada
Danilo Russo
Mauro Mucedda
Paolo Agnelli
Angelica Crottini
Emanuele Ferri
Adriano Martinoli
Maurizio Casiraghi
author_sort Andrea Galimberti
title Integrated operational taxonomic units (IOTUs) in echolocating bats: a bridge between molecular and traditional taxonomy.
title_short Integrated operational taxonomic units (IOTUs) in echolocating bats: a bridge between molecular and traditional taxonomy.
title_full Integrated operational taxonomic units (IOTUs) in echolocating bats: a bridge between molecular and traditional taxonomy.
title_fullStr Integrated operational taxonomic units (IOTUs) in echolocating bats: a bridge between molecular and traditional taxonomy.
title_full_unstemmed Integrated operational taxonomic units (IOTUs) in echolocating bats: a bridge between molecular and traditional taxonomy.
title_sort integrated operational taxonomic units (iotus) in echolocating bats: a bridge between molecular and traditional taxonomy.
publisher Public Library of Science (PLoS)
publishDate 2012
url https://doi.org/10.1371/journal.pone.0040122
https://doaj.org/article/dde7eb57f1f744cabd364e4e3ea515ad
genre Myotis nattereri
genre_facet Myotis nattereri
op_source PLoS ONE, Vol 7, Iss 6, p e40122 (2012)
op_relation http://europepmc.org/articles/PMC3386196?pdf=render
https://doaj.org/toc/1932-6203
1932-6203
doi:10.1371/journal.pone.0040122
https://doaj.org/article/dde7eb57f1f744cabd364e4e3ea515ad
op_doi https://doi.org/10.1371/journal.pone.0040122
container_title PLoS ONE
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