An accessible method for implementing hierarchical models with spatio-temporal abundance data.
A common goal in ecology and wildlife management is to determine the causes of variation in population dynamics over long periods of time and across large spatial scales. Many assumptions must nevertheless be overcome to make appropriate inference about spatio-temporal variation in population dynami...
Published in: | PLoS ONE |
---|---|
Main Authors: | , , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
Public Library of Science (PLoS)
2012
|
Subjects: | |
Online Access: | https://doi.org/10.1371/journal.pone.0049395 https://doaj.org/article/d893523a94954373820e7e2ffc29b6f1 |
id |
ftdoajarticles:oai:doaj.org/article:d893523a94954373820e7e2ffc29b6f1 |
---|---|
record_format |
openpolar |
spelling |
ftdoajarticles:oai:doaj.org/article:d893523a94954373820e7e2ffc29b6f1 2023-05-15T16:23:10+02:00 An accessible method for implementing hierarchical models with spatio-temporal abundance data. Beth E Ross Mevin B Hooten David N Koons 2012-01-01T00:00:00Z https://doi.org/10.1371/journal.pone.0049395 https://doaj.org/article/d893523a94954373820e7e2ffc29b6f1 EN eng Public Library of Science (PLoS) http://europepmc.org/articles/PMC3500297?pdf=render https://doaj.org/toc/1932-6203 1932-6203 doi:10.1371/journal.pone.0049395 https://doaj.org/article/d893523a94954373820e7e2ffc29b6f1 PLoS ONE, Vol 7, Iss 11, p e49395 (2012) Medicine R Science Q article 2012 ftdoajarticles https://doi.org/10.1371/journal.pone.0049395 2022-12-30T21:56:20Z A common goal in ecology and wildlife management is to determine the causes of variation in population dynamics over long periods of time and across large spatial scales. Many assumptions must nevertheless be overcome to make appropriate inference about spatio-temporal variation in population dynamics, such as autocorrelation among data points, excess zeros, and observation error in count data. To address these issues, many scientists and statisticians have recommended the use of Bayesian hierarchical models. Unfortunately, hierarchical statistical models remain somewhat difficult to use because of the necessary quantitative background needed to implement them, or because of the computational demands of using Markov Chain Monte Carlo algorithms to estimate parameters. Fortunately, new tools have recently been developed that make it more feasible for wildlife biologists to fit sophisticated hierarchical Bayesian models (i.e., Integrated Nested Laplace Approximation, 'INLA'). We present a case study using two important game species in North America, the lesser and greater scaup, to demonstrate how INLA can be used to estimate the parameters in a hierarchical model that decouples observation error from process variation, and accounts for unknown sources of excess zeros as well as spatial and temporal dependence in the data. Ultimately, our goal was to make unbiased inference about spatial variation in population trends over time. Article in Journal/Newspaper greater scaup Directory of Open Access Journals: DOAJ Articles Laplace ENVELOPE(141.467,141.467,-66.782,-66.782) PLoS ONE 7 11 e49395 |
institution |
Open Polar |
collection |
Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
Medicine R Science Q |
spellingShingle |
Medicine R Science Q Beth E Ross Mevin B Hooten David N Koons An accessible method for implementing hierarchical models with spatio-temporal abundance data. |
topic_facet |
Medicine R Science Q |
description |
A common goal in ecology and wildlife management is to determine the causes of variation in population dynamics over long periods of time and across large spatial scales. Many assumptions must nevertheless be overcome to make appropriate inference about spatio-temporal variation in population dynamics, such as autocorrelation among data points, excess zeros, and observation error in count data. To address these issues, many scientists and statisticians have recommended the use of Bayesian hierarchical models. Unfortunately, hierarchical statistical models remain somewhat difficult to use because of the necessary quantitative background needed to implement them, or because of the computational demands of using Markov Chain Monte Carlo algorithms to estimate parameters. Fortunately, new tools have recently been developed that make it more feasible for wildlife biologists to fit sophisticated hierarchical Bayesian models (i.e., Integrated Nested Laplace Approximation, 'INLA'). We present a case study using two important game species in North America, the lesser and greater scaup, to demonstrate how INLA can be used to estimate the parameters in a hierarchical model that decouples observation error from process variation, and accounts for unknown sources of excess zeros as well as spatial and temporal dependence in the data. Ultimately, our goal was to make unbiased inference about spatial variation in population trends over time. |
format |
Article in Journal/Newspaper |
author |
Beth E Ross Mevin B Hooten David N Koons |
author_facet |
Beth E Ross Mevin B Hooten David N Koons |
author_sort |
Beth E Ross |
title |
An accessible method for implementing hierarchical models with spatio-temporal abundance data. |
title_short |
An accessible method for implementing hierarchical models with spatio-temporal abundance data. |
title_full |
An accessible method for implementing hierarchical models with spatio-temporal abundance data. |
title_fullStr |
An accessible method for implementing hierarchical models with spatio-temporal abundance data. |
title_full_unstemmed |
An accessible method for implementing hierarchical models with spatio-temporal abundance data. |
title_sort |
accessible method for implementing hierarchical models with spatio-temporal abundance data. |
publisher |
Public Library of Science (PLoS) |
publishDate |
2012 |
url |
https://doi.org/10.1371/journal.pone.0049395 https://doaj.org/article/d893523a94954373820e7e2ffc29b6f1 |
long_lat |
ENVELOPE(141.467,141.467,-66.782,-66.782) |
geographic |
Laplace |
geographic_facet |
Laplace |
genre |
greater scaup |
genre_facet |
greater scaup |
op_source |
PLoS ONE, Vol 7, Iss 11, p e49395 (2012) |
op_relation |
http://europepmc.org/articles/PMC3500297?pdf=render https://doaj.org/toc/1932-6203 1932-6203 doi:10.1371/journal.pone.0049395 https://doaj.org/article/d893523a94954373820e7e2ffc29b6f1 |
op_doi |
https://doi.org/10.1371/journal.pone.0049395 |
container_title |
PLoS ONE |
container_volume |
7 |
container_issue |
11 |
container_start_page |
e49395 |
_version_ |
1766011382084403200 |