Amplicon sequencing based profiling of bacterial diversity from Krossfjorden, Arctic
In this study, Illumina Miseq sequencing of 16S rRNA gene amplicon was performed on sediments collected from Krossfjorden, Arctic for analyzing the bacterial community structure. Metagenome contained 15,936 sequences with 5,809,491 bp size and 53% G+C content. Metagenome sequence information are now...
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ftdoajarticles:oai:doaj.org/article:cbbafeffeefa4e84a9193eaaa4b8e58f 2023-05-15T14:39:31+02:00 Amplicon sequencing based profiling of bacterial diversity from Krossfjorden, Arctic Bhavya Kachiprath Jayesh Puthumana Jayanath Gopi Solly Solomon K.P. Krishnan Rosamma Philip 2018-12-01T00:00:00Z https://doi.org/10.1016/j.dib.2018.11.101 https://doaj.org/article/cbbafeffeefa4e84a9193eaaa4b8e58f EN eng Elsevier http://www.sciencedirect.com/science/article/pii/S235234091831494X https://doaj.org/toc/2352-3409 2352-3409 doi:10.1016/j.dib.2018.11.101 https://doaj.org/article/cbbafeffeefa4e84a9193eaaa4b8e58f Data in Brief, Vol 21, Iss , Pp 2522-2525 (2018) Computer applications to medicine. Medical informatics R858-859.7 Science (General) Q1-390 article 2018 ftdoajarticles https://doi.org/10.1016/j.dib.2018.11.101 2023-01-08T01:29:56Z In this study, Illumina Miseq sequencing of 16S rRNA gene amplicon was performed on sediments collected from Krossfjorden, Arctic for analyzing the bacterial community structure. Metagenome contained 15,936 sequences with 5,809,491 bp size and 53% G+C content. Metagenome sequence information are now available at NCBI under the Sequence Read Archive (SRA) database with accession no. SRP159159. Taxonomic hits distribution from MG-RAST analysis revealed the dominance of Alpha- and Gamma-subdivisions of Proteobacteria (88.89%) along with Bacteriodetes (8.89%) and Firmicutes (2.22%). Predominant species were Alteromonadales bacterium TW-7 (24%), Pseudoalteromonas haloplanktis (20%) and Pseudoalteromonas spp. SM9913 (18%). MG-RAST assisted analysis also detected the presence of a variety of marine taxa like Bacteriodes, Pseudovibrio, Marinobacter, Idiomarina, Teredinibacter, etc. which take part in key ecological functions and biogeochemical activities of Arctic fjord ecosystems. Keywords: Arctic, Bacterial diversity, Metagenome, Amplicon sequencing, Illumina Article in Journal/Newspaper Arctic Krossfjord* Directory of Open Access Journals: DOAJ Articles Arctic Krossfjorden ENVELOPE(11.742,11.742,79.141,79.141) Data in Brief 21 2522 2525 |
institution |
Open Polar |
collection |
Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
Computer applications to medicine. Medical informatics R858-859.7 Science (General) Q1-390 |
spellingShingle |
Computer applications to medicine. Medical informatics R858-859.7 Science (General) Q1-390 Bhavya Kachiprath Jayesh Puthumana Jayanath Gopi Solly Solomon K.P. Krishnan Rosamma Philip Amplicon sequencing based profiling of bacterial diversity from Krossfjorden, Arctic |
topic_facet |
Computer applications to medicine. Medical informatics R858-859.7 Science (General) Q1-390 |
description |
In this study, Illumina Miseq sequencing of 16S rRNA gene amplicon was performed on sediments collected from Krossfjorden, Arctic for analyzing the bacterial community structure. Metagenome contained 15,936 sequences with 5,809,491 bp size and 53% G+C content. Metagenome sequence information are now available at NCBI under the Sequence Read Archive (SRA) database with accession no. SRP159159. Taxonomic hits distribution from MG-RAST analysis revealed the dominance of Alpha- and Gamma-subdivisions of Proteobacteria (88.89%) along with Bacteriodetes (8.89%) and Firmicutes (2.22%). Predominant species were Alteromonadales bacterium TW-7 (24%), Pseudoalteromonas haloplanktis (20%) and Pseudoalteromonas spp. SM9913 (18%). MG-RAST assisted analysis also detected the presence of a variety of marine taxa like Bacteriodes, Pseudovibrio, Marinobacter, Idiomarina, Teredinibacter, etc. which take part in key ecological functions and biogeochemical activities of Arctic fjord ecosystems. Keywords: Arctic, Bacterial diversity, Metagenome, Amplicon sequencing, Illumina |
format |
Article in Journal/Newspaper |
author |
Bhavya Kachiprath Jayesh Puthumana Jayanath Gopi Solly Solomon K.P. Krishnan Rosamma Philip |
author_facet |
Bhavya Kachiprath Jayesh Puthumana Jayanath Gopi Solly Solomon K.P. Krishnan Rosamma Philip |
author_sort |
Bhavya Kachiprath |
title |
Amplicon sequencing based profiling of bacterial diversity from Krossfjorden, Arctic |
title_short |
Amplicon sequencing based profiling of bacterial diversity from Krossfjorden, Arctic |
title_full |
Amplicon sequencing based profiling of bacterial diversity from Krossfjorden, Arctic |
title_fullStr |
Amplicon sequencing based profiling of bacterial diversity from Krossfjorden, Arctic |
title_full_unstemmed |
Amplicon sequencing based profiling of bacterial diversity from Krossfjorden, Arctic |
title_sort |
amplicon sequencing based profiling of bacterial diversity from krossfjorden, arctic |
publisher |
Elsevier |
publishDate |
2018 |
url |
https://doi.org/10.1016/j.dib.2018.11.101 https://doaj.org/article/cbbafeffeefa4e84a9193eaaa4b8e58f |
long_lat |
ENVELOPE(11.742,11.742,79.141,79.141) |
geographic |
Arctic Krossfjorden |
geographic_facet |
Arctic Krossfjorden |
genre |
Arctic Krossfjord* |
genre_facet |
Arctic Krossfjord* |
op_source |
Data in Brief, Vol 21, Iss , Pp 2522-2525 (2018) |
op_relation |
http://www.sciencedirect.com/science/article/pii/S235234091831494X https://doaj.org/toc/2352-3409 2352-3409 doi:10.1016/j.dib.2018.11.101 https://doaj.org/article/cbbafeffeefa4e84a9193eaaa4b8e58f |
op_doi |
https://doi.org/10.1016/j.dib.2018.11.101 |
container_title |
Data in Brief |
container_volume |
21 |
container_start_page |
2522 |
op_container_end_page |
2525 |
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1766311513735299072 |