Tracing hepatitis B virus (HBV) genotype B5 (formerly B6) evolutionary history in the circumpolar Arctic through phylogeographic modelling
Background Indigenous populations of the circumpolar Arctic are considered to be endemically infected (>2% prevalence) with hepatitis B virus (HBV), with subgenotype B5 (formerly B6) unique to these populations. The distinctive properties of HBV/B5, including high nucleotide diversity yet no sign...
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ftdoajarticles:oai:doaj.org/article:ca3065e9987842bd91e0e0f61be39d8c 2024-01-07T09:41:10+01:00 Tracing hepatitis B virus (HBV) genotype B5 (formerly B6) evolutionary history in the circumpolar Arctic through phylogeographic modelling Remco Bouckaert Brenna C. Simons Henrik Krarup T. Max Friesen Carla Osiowy 2017-08-01T00:00:00Z https://doi.org/10.7717/peerj.3757 https://doaj.org/article/ca3065e9987842bd91e0e0f61be39d8c EN eng PeerJ Inc. https://peerj.com/articles/3757.pdf https://peerj.com/articles/3757/ https://doaj.org/toc/2167-8359 doi:10.7717/peerj.3757 2167-8359 https://doaj.org/article/ca3065e9987842bd91e0e0f61be39d8c PeerJ, Vol 5, p e3757 (2017) Hepatitis B virus Genotype Evolution Arctic Inuit Host-pathogen balance Medicine R Biology (General) QH301-705.5 article 2017 ftdoajarticles https://doi.org/10.7717/peerj.3757 2023-12-10T01:53:47Z Background Indigenous populations of the circumpolar Arctic are considered to be endemically infected (>2% prevalence) with hepatitis B virus (HBV), with subgenotype B5 (formerly B6) unique to these populations. The distinctive properties of HBV/B5, including high nucleotide diversity yet no significant liver disease, suggest virus adaptation through long-term host-pathogen association. Methods To investigate the origin and evolutionary spread of HBV/B5 into the circumpolar Arctic, fifty-seven partial and full genome sequences from Alaska, Canada and Greenland, having known location and sampling dates spanning 40 years, were phylogeographically investigated by Bayesian analysis (BEAST 2) using a reversible-jump-based substitution model and a clock rate estimated at 4.1 × 10−5 substitutions/site/year. Results Following an initial divergence from an Asian viral ancestor approximately 1954 years before present (YBP; 95% highest probability density interval [1188, 2901]), HBV/B5 coalescence occurred almost 1000 years later. Surprisingly, the HBV/B5 ancestor appears to locate first to Greenland in a rapid coastal route progression based on the landscape aware geographic model, with subsequent B5 evolution and spread westward. Bayesian skyline plot analysis demonstrated an HBV/B5 population expansion occurring approximately 400 YBP, coinciding with the disruption of the Neo-Eskimo Thule culture into more heterogeneous and regionally distinct Inuit populations throughout the North American Arctic. Discussion HBV/B5 origin and spread appears to occur coincident with the movement of Neo-Eskimo (Inuit) populations within the past 1000 years, further supporting the hypothesis of HBV/host co-expansion, and illustrating the concept of host-pathogen adaptation and balance. Article in Journal/Newspaper Arctic eskimo* Greenland inuit Thule Thule culture Alaska Directory of Open Access Journals: DOAJ Articles Arctic Canada Greenland PeerJ 5 e3757 |
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Open Polar |
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Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
Hepatitis B virus Genotype Evolution Arctic Inuit Host-pathogen balance Medicine R Biology (General) QH301-705.5 |
spellingShingle |
Hepatitis B virus Genotype Evolution Arctic Inuit Host-pathogen balance Medicine R Biology (General) QH301-705.5 Remco Bouckaert Brenna C. Simons Henrik Krarup T. Max Friesen Carla Osiowy Tracing hepatitis B virus (HBV) genotype B5 (formerly B6) evolutionary history in the circumpolar Arctic through phylogeographic modelling |
topic_facet |
Hepatitis B virus Genotype Evolution Arctic Inuit Host-pathogen balance Medicine R Biology (General) QH301-705.5 |
description |
Background Indigenous populations of the circumpolar Arctic are considered to be endemically infected (>2% prevalence) with hepatitis B virus (HBV), with subgenotype B5 (formerly B6) unique to these populations. The distinctive properties of HBV/B5, including high nucleotide diversity yet no significant liver disease, suggest virus adaptation through long-term host-pathogen association. Methods To investigate the origin and evolutionary spread of HBV/B5 into the circumpolar Arctic, fifty-seven partial and full genome sequences from Alaska, Canada and Greenland, having known location and sampling dates spanning 40 years, were phylogeographically investigated by Bayesian analysis (BEAST 2) using a reversible-jump-based substitution model and a clock rate estimated at 4.1 × 10−5 substitutions/site/year. Results Following an initial divergence from an Asian viral ancestor approximately 1954 years before present (YBP; 95% highest probability density interval [1188, 2901]), HBV/B5 coalescence occurred almost 1000 years later. Surprisingly, the HBV/B5 ancestor appears to locate first to Greenland in a rapid coastal route progression based on the landscape aware geographic model, with subsequent B5 evolution and spread westward. Bayesian skyline plot analysis demonstrated an HBV/B5 population expansion occurring approximately 400 YBP, coinciding with the disruption of the Neo-Eskimo Thule culture into more heterogeneous and regionally distinct Inuit populations throughout the North American Arctic. Discussion HBV/B5 origin and spread appears to occur coincident with the movement of Neo-Eskimo (Inuit) populations within the past 1000 years, further supporting the hypothesis of HBV/host co-expansion, and illustrating the concept of host-pathogen adaptation and balance. |
format |
Article in Journal/Newspaper |
author |
Remco Bouckaert Brenna C. Simons Henrik Krarup T. Max Friesen Carla Osiowy |
author_facet |
Remco Bouckaert Brenna C. Simons Henrik Krarup T. Max Friesen Carla Osiowy |
author_sort |
Remco Bouckaert |
title |
Tracing hepatitis B virus (HBV) genotype B5 (formerly B6) evolutionary history in the circumpolar Arctic through phylogeographic modelling |
title_short |
Tracing hepatitis B virus (HBV) genotype B5 (formerly B6) evolutionary history in the circumpolar Arctic through phylogeographic modelling |
title_full |
Tracing hepatitis B virus (HBV) genotype B5 (formerly B6) evolutionary history in the circumpolar Arctic through phylogeographic modelling |
title_fullStr |
Tracing hepatitis B virus (HBV) genotype B5 (formerly B6) evolutionary history in the circumpolar Arctic through phylogeographic modelling |
title_full_unstemmed |
Tracing hepatitis B virus (HBV) genotype B5 (formerly B6) evolutionary history in the circumpolar Arctic through phylogeographic modelling |
title_sort |
tracing hepatitis b virus (hbv) genotype b5 (formerly b6) evolutionary history in the circumpolar arctic through phylogeographic modelling |
publisher |
PeerJ Inc. |
publishDate |
2017 |
url |
https://doi.org/10.7717/peerj.3757 https://doaj.org/article/ca3065e9987842bd91e0e0f61be39d8c |
geographic |
Arctic Canada Greenland |
geographic_facet |
Arctic Canada Greenland |
genre |
Arctic eskimo* Greenland inuit Thule Thule culture Alaska |
genre_facet |
Arctic eskimo* Greenland inuit Thule Thule culture Alaska |
op_source |
PeerJ, Vol 5, p e3757 (2017) |
op_relation |
https://peerj.com/articles/3757.pdf https://peerj.com/articles/3757/ https://doaj.org/toc/2167-8359 doi:10.7717/peerj.3757 2167-8359 https://doaj.org/article/ca3065e9987842bd91e0e0f61be39d8c |
op_doi |
https://doi.org/10.7717/peerj.3757 |
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PeerJ |
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5 |
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e3757 |
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