Molecular Detection of Gamma Coronaviruses in Bird Parks of Iran
Gamma Coronaviruses (GCoVs) are distributed worldwide, affecting a wide range of bird species, the beluga whale, and bottlenose dolphins. Because of the limited proofreading capability in the viral encoded polymerase, they emerge genetically diverse. There has been no molecular surveillance data to...
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ftdoajarticles:oai:doaj.org/article:c79f2a2664dd4843a1d859144cb085ce 2023-05-15T15:41:52+02:00 Molecular Detection of Gamma Coronaviruses in Bird Parks of Iran Hannaneh Yaghoubi A. Ghalyanchilangeroudi Vahid Karimi S. A. Ghafouri M. Hashemzadeh H. Hosseini M. H. Fallah F. Sadat Mousavi H. Najafi 2019-12-01T00:00:00Z https://doi.org/10.22092/ari.2018.116786.1176 https://doaj.org/article/c79f2a2664dd4843a1d859144cb085ce EN FR eng fre Razi Vaccine and Serum Research Institute https://archrazi.areeo.ac.ir/article_120191_c6fae8a431f025b13db442d5fbc00516.pdf https://doaj.org/toc/0365-3439 https://doaj.org/toc/2008-9872 0365-3439 2008-9872 doi:10.22092/ari.2018.116786.1176 https://doaj.org/article/c79f2a2664dd4843a1d859144cb085ce Archives of Razi Institute, Vol 74, Iss 4, Pp 349-355 (2019) gamma coronavirus molecular detection bird parks iran phylogenetic analysis Veterinary medicine SF600-1100 article 2019 ftdoajarticles https://doi.org/10.22092/ari.2018.116786.1176 2022-12-31T00:53:25Z Gamma Coronaviruses (GCoVs) are distributed worldwide, affecting a wide range of bird species, the beluga whale, and bottlenose dolphins. Because of the limited proofreading capability in the viral encoded polymerase, they emerge genetically diverse. There has been no molecular surveillance data to describe the epidemiology of GCOVs in avian species. The present study was conducted to detect GCOVs in Tehran birds’ parks, 2015. Cloacal swabs (267 samples) from eight different bird species ((Chickens ( Gallus gallus ), Pheasant ( Phasianus colchicus ), Turkey ( Meleagris gallopavo ), Partridge ( Perdix perdix ), Quail ( Coturnix coturnix ), Duck (Anas platyrhynchos), Goose (Anserini),and Guinea fowl (Numididae)) were collected, the viral RNA was extracted, the RT-PCR was performed using QIAGEN one step RT-PCR kit and the primers targeting “3'-UTR” and “Nucleocapsid” genes. The detection rate was approximately 8.99%. GCOVs were detected in the chicken, quail, pheasant, turkey, and the partridge with different prevalence rates. Phylogenetic tree based on partial nucleotide sequences of the N gene clustered the samples into two groups. It is the first report of GCOVs in non-commercial birds in Iran. According to our results, GCOVs are circulating in different avian species, and further studies are needed to isolate these viruses and evaluate their pathogenesis. Article in Journal/Newspaper Beluga Beluga whale Beluga* Directory of Open Access Journals: DOAJ Articles |
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English French |
topic |
gamma coronavirus molecular detection bird parks iran phylogenetic analysis Veterinary medicine SF600-1100 |
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gamma coronavirus molecular detection bird parks iran phylogenetic analysis Veterinary medicine SF600-1100 Hannaneh Yaghoubi A. Ghalyanchilangeroudi Vahid Karimi S. A. Ghafouri M. Hashemzadeh H. Hosseini M. H. Fallah F. Sadat Mousavi H. Najafi Molecular Detection of Gamma Coronaviruses in Bird Parks of Iran |
topic_facet |
gamma coronavirus molecular detection bird parks iran phylogenetic analysis Veterinary medicine SF600-1100 |
description |
Gamma Coronaviruses (GCoVs) are distributed worldwide, affecting a wide range of bird species, the beluga whale, and bottlenose dolphins. Because of the limited proofreading capability in the viral encoded polymerase, they emerge genetically diverse. There has been no molecular surveillance data to describe the epidemiology of GCOVs in avian species. The present study was conducted to detect GCOVs in Tehran birds’ parks, 2015. Cloacal swabs (267 samples) from eight different bird species ((Chickens ( Gallus gallus ), Pheasant ( Phasianus colchicus ), Turkey ( Meleagris gallopavo ), Partridge ( Perdix perdix ), Quail ( Coturnix coturnix ), Duck (Anas platyrhynchos), Goose (Anserini),and Guinea fowl (Numididae)) were collected, the viral RNA was extracted, the RT-PCR was performed using QIAGEN one step RT-PCR kit and the primers targeting “3'-UTR” and “Nucleocapsid” genes. The detection rate was approximately 8.99%. GCOVs were detected in the chicken, quail, pheasant, turkey, and the partridge with different prevalence rates. Phylogenetic tree based on partial nucleotide sequences of the N gene clustered the samples into two groups. It is the first report of GCOVs in non-commercial birds in Iran. According to our results, GCOVs are circulating in different avian species, and further studies are needed to isolate these viruses and evaluate their pathogenesis. |
format |
Article in Journal/Newspaper |
author |
Hannaneh Yaghoubi A. Ghalyanchilangeroudi Vahid Karimi S. A. Ghafouri M. Hashemzadeh H. Hosseini M. H. Fallah F. Sadat Mousavi H. Najafi |
author_facet |
Hannaneh Yaghoubi A. Ghalyanchilangeroudi Vahid Karimi S. A. Ghafouri M. Hashemzadeh H. Hosseini M. H. Fallah F. Sadat Mousavi H. Najafi |
author_sort |
Hannaneh Yaghoubi |
title |
Molecular Detection of Gamma Coronaviruses in Bird Parks of Iran |
title_short |
Molecular Detection of Gamma Coronaviruses in Bird Parks of Iran |
title_full |
Molecular Detection of Gamma Coronaviruses in Bird Parks of Iran |
title_fullStr |
Molecular Detection of Gamma Coronaviruses in Bird Parks of Iran |
title_full_unstemmed |
Molecular Detection of Gamma Coronaviruses in Bird Parks of Iran |
title_sort |
molecular detection of gamma coronaviruses in bird parks of iran |
publisher |
Razi Vaccine and Serum Research Institute |
publishDate |
2019 |
url |
https://doi.org/10.22092/ari.2018.116786.1176 https://doaj.org/article/c79f2a2664dd4843a1d859144cb085ce |
genre |
Beluga Beluga whale Beluga* |
genre_facet |
Beluga Beluga whale Beluga* |
op_source |
Archives of Razi Institute, Vol 74, Iss 4, Pp 349-355 (2019) |
op_relation |
https://archrazi.areeo.ac.ir/article_120191_c6fae8a431f025b13db442d5fbc00516.pdf https://doaj.org/toc/0365-3439 https://doaj.org/toc/2008-9872 0365-3439 2008-9872 doi:10.22092/ari.2018.116786.1176 https://doaj.org/article/c79f2a2664dd4843a1d859144cb085ce |
op_doi |
https://doi.org/10.22092/ari.2018.116786.1176 |
_version_ |
1766374753392656384 |