Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach

Abstract Geochemical variations of sedimentary records contain vital information for understanding paleoenvironment and paleoclimate. However, to obtain quantitative data in the laboratory is laborious, which ultimately restricts the temporal and spatial resolution. Quantification based on fast-acqu...

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Published in:Scientific Reports
Main Authors: An-Sheng Lee, Weng-Si Chao, Sofia Ya Hsuan Liou, Ralf Tiedemann, Bernd Zolitschka, Lester Lembke-Jene
Format: Article in Journal/Newspaper
Language:English
Published: Nature Portfolio 2022
Subjects:
R
Q
Online Access:https://doi.org/10.1038/s41598-022-25377-x
https://doaj.org/article/c4fca907bb214a9f8b3871869be70ce9
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spelling ftdoajarticles:oai:doaj.org/article:c4fca907bb214a9f8b3871869be70ce9 2023-05-15T18:25:36+02:00 Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach An-Sheng Lee Weng-Si Chao Sofia Ya Hsuan Liou Ralf Tiedemann Bernd Zolitschka Lester Lembke-Jene 2022-12-01T00:00:00Z https://doi.org/10.1038/s41598-022-25377-x https://doaj.org/article/c4fca907bb214a9f8b3871869be70ce9 EN eng Nature Portfolio https://doi.org/10.1038/s41598-022-25377-x https://doaj.org/toc/2045-2322 doi:10.1038/s41598-022-25377-x 2045-2322 https://doaj.org/article/c4fca907bb214a9f8b3871869be70ce9 Scientific Reports, Vol 12, Iss 1, Pp 1-11 (2022) Medicine R Science Q article 2022 ftdoajarticles https://doi.org/10.1038/s41598-022-25377-x 2022-12-30T20:13:55Z Abstract Geochemical variations of sedimentary records contain vital information for understanding paleoenvironment and paleoclimate. However, to obtain quantitative data in the laboratory is laborious, which ultimately restricts the temporal and spatial resolution. Quantification based on fast-acquisition and high-resolution provides a potential solution but is restricted to qualitative X-ray fluorescence (XRF) core scanning data. Here, we apply machine learning (ML) to advance the quantification progress and target calcium carbonate (CaCO3) and total organic carbon (TOC) for quantification to test the potential of such an XRF-ML approach. Raw XRF spectra are used as input data instead of software-based extraction of elemental intensities to avoid bias and increase information. Our dataset comprises Pacific and Southern Ocean marine sediment cores from high- to mid-latitudes to extend the applicability of quantification models from a site-specific to a multi-regional scale. ML-built models are carefully evaluated with a training set, a test set and a case study. The acquired ML-models provide better results with R2 of 0.96 for CaCO3 and 0.78 for TOC than conventional methods. In our case study, the ML-performance for TOC is comparably lower but still provides potential for future optimization. Altogether, this study allows to conveniently generate high-resolution bulk chemistry records without losing accuracy. Article in Journal/Newspaper Southern Ocean Directory of Open Access Journals: DOAJ Articles Southern Ocean Pacific Scientific Reports 12 1
institution Open Polar
collection Directory of Open Access Journals: DOAJ Articles
op_collection_id ftdoajarticles
language English
topic Medicine
R
Science
Q
spellingShingle Medicine
R
Science
Q
An-Sheng Lee
Weng-Si Chao
Sofia Ya Hsuan Liou
Ralf Tiedemann
Bernd Zolitschka
Lester Lembke-Jene
Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach
topic_facet Medicine
R
Science
Q
description Abstract Geochemical variations of sedimentary records contain vital information for understanding paleoenvironment and paleoclimate. However, to obtain quantitative data in the laboratory is laborious, which ultimately restricts the temporal and spatial resolution. Quantification based on fast-acquisition and high-resolution provides a potential solution but is restricted to qualitative X-ray fluorescence (XRF) core scanning data. Here, we apply machine learning (ML) to advance the quantification progress and target calcium carbonate (CaCO3) and total organic carbon (TOC) for quantification to test the potential of such an XRF-ML approach. Raw XRF spectra are used as input data instead of software-based extraction of elemental intensities to avoid bias and increase information. Our dataset comprises Pacific and Southern Ocean marine sediment cores from high- to mid-latitudes to extend the applicability of quantification models from a site-specific to a multi-regional scale. ML-built models are carefully evaluated with a training set, a test set and a case study. The acquired ML-models provide better results with R2 of 0.96 for CaCO3 and 0.78 for TOC than conventional methods. In our case study, the ML-performance for TOC is comparably lower but still provides potential for future optimization. Altogether, this study allows to conveniently generate high-resolution bulk chemistry records without losing accuracy.
format Article in Journal/Newspaper
author An-Sheng Lee
Weng-Si Chao
Sofia Ya Hsuan Liou
Ralf Tiedemann
Bernd Zolitschka
Lester Lembke-Jene
author_facet An-Sheng Lee
Weng-Si Chao
Sofia Ya Hsuan Liou
Ralf Tiedemann
Bernd Zolitschka
Lester Lembke-Jene
author_sort An-Sheng Lee
title Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach
title_short Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach
title_full Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach
title_fullStr Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach
title_full_unstemmed Quantifying calcium carbonate and organic carbon content in marine sediments from XRF-scanning spectra with a machine learning approach
title_sort quantifying calcium carbonate and organic carbon content in marine sediments from xrf-scanning spectra with a machine learning approach
publisher Nature Portfolio
publishDate 2022
url https://doi.org/10.1038/s41598-022-25377-x
https://doaj.org/article/c4fca907bb214a9f8b3871869be70ce9
geographic Southern Ocean
Pacific
geographic_facet Southern Ocean
Pacific
genre Southern Ocean
genre_facet Southern Ocean
op_source Scientific Reports, Vol 12, Iss 1, Pp 1-11 (2022)
op_relation https://doi.org/10.1038/s41598-022-25377-x
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doi:10.1038/s41598-022-25377-x
2045-2322
https://doaj.org/article/c4fca907bb214a9f8b3871869be70ce9
op_doi https://doi.org/10.1038/s41598-022-25377-x
container_title Scientific Reports
container_volume 12
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