Microbial Composition of Natural, Agricultural, and Technogenic Soils of Both Forest and Forest-Tundra of the Russian North
Technogenic processes and agrodevelopment of the soil cover lead to significant transformations of soil chemical and biological properties. New methods of soil microbiology, including next-generation sequencing, allows us to investigate soil microbial composition in detail, including the taxonomy an...
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ftdoajarticles:oai:doaj.org/article:c17f632f0f59429593b039fdac24fb2f 2023-09-05T13:22:50+02:00 Microbial Composition of Natural, Agricultural, and Technogenic Soils of Both Forest and Forest-Tundra of the Russian North Evgeny Abakumov Aleksei Zverev Evgeny Andronov Timur Nizamutdinov 2023-08-01T00:00:00Z https://doi.org/10.3390/app13158981 https://doaj.org/article/c17f632f0f59429593b039fdac24fb2f EN eng MDPI AG https://www.mdpi.com/2076-3417/13/15/8981 https://doaj.org/toc/2076-3417 doi:10.3390/app13158981 2076-3417 https://doaj.org/article/c17f632f0f59429593b039fdac24fb2f Applied Sciences, Vol 13, Iss 8981, p 8981 (2023) soils microbiome 16S rDNA amplicon sequencing northern soil microbiota Technology T Engineering (General). Civil engineering (General) TA1-2040 Biology (General) QH301-705.5 Physics QC1-999 Chemistry QD1-999 article 2023 ftdoajarticles https://doi.org/10.3390/app13158981 2023-08-13T00:35:06Z Technogenic processes and agrodevelopment of the soil cover lead to significant transformations of soil chemical and biological properties. New methods of soil microbiology, including next-generation sequencing, allows us to investigate soil microbial composition in detail, including the taxonomy and ecological functions of soil bacteria. This study presents data on the taxonomic diversity of mature and anthropogenically disturbed soils in various ecosystems of Russia. Natural soils in the southern taiga (Leningrad region and Novgorod region), northern taiga (Komi republic), forest-tundra, and tundra (Nadym city and Salekhard city) were investigated using next-generation sequencing (16S rDNA amplicon sequencing). In each natural bioclimatic zone, anthropogenically disturbed quarry soils or agriculturally transformed soils were also investigated. It was found that Proteobacteria, Actinobateriota, Acidobateriota, Bacteroidota, Chroloflexi, Planctomycetota, Verrucomicrobiota and Firmicutes phyla were dominant in natural soils, with minor differences between agrosoils and mature soils. In the soils of quarries, there were revealed processes of declining diversity of microbiome communities and the replacement of them by bacterial communities, different from natural and agrogenic soils. Thus, the microbial community is the most sensitive indicator of anthropogenic soil amendments and can serve to assess the success of soil self-restoration after human intervention. Article in Journal/Newspaper Russian North taiga Tundra Directory of Open Access Journals: DOAJ Articles Nadym ENVELOPE(72.517,72.517,65.533,65.533) Salekhard ENVELOPE(66.602,66.602,66.530,66.530) Applied Sciences 13 15 8981 |
institution |
Open Polar |
collection |
Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
soils microbiome 16S rDNA amplicon sequencing northern soil microbiota Technology T Engineering (General). Civil engineering (General) TA1-2040 Biology (General) QH301-705.5 Physics QC1-999 Chemistry QD1-999 |
spellingShingle |
soils microbiome 16S rDNA amplicon sequencing northern soil microbiota Technology T Engineering (General). Civil engineering (General) TA1-2040 Biology (General) QH301-705.5 Physics QC1-999 Chemistry QD1-999 Evgeny Abakumov Aleksei Zverev Evgeny Andronov Timur Nizamutdinov Microbial Composition of Natural, Agricultural, and Technogenic Soils of Both Forest and Forest-Tundra of the Russian North |
topic_facet |
soils microbiome 16S rDNA amplicon sequencing northern soil microbiota Technology T Engineering (General). Civil engineering (General) TA1-2040 Biology (General) QH301-705.5 Physics QC1-999 Chemistry QD1-999 |
description |
Technogenic processes and agrodevelopment of the soil cover lead to significant transformations of soil chemical and biological properties. New methods of soil microbiology, including next-generation sequencing, allows us to investigate soil microbial composition in detail, including the taxonomy and ecological functions of soil bacteria. This study presents data on the taxonomic diversity of mature and anthropogenically disturbed soils in various ecosystems of Russia. Natural soils in the southern taiga (Leningrad region and Novgorod region), northern taiga (Komi republic), forest-tundra, and tundra (Nadym city and Salekhard city) were investigated using next-generation sequencing (16S rDNA amplicon sequencing). In each natural bioclimatic zone, anthropogenically disturbed quarry soils or agriculturally transformed soils were also investigated. It was found that Proteobacteria, Actinobateriota, Acidobateriota, Bacteroidota, Chroloflexi, Planctomycetota, Verrucomicrobiota and Firmicutes phyla were dominant in natural soils, with minor differences between agrosoils and mature soils. In the soils of quarries, there were revealed processes of declining diversity of microbiome communities and the replacement of them by bacterial communities, different from natural and agrogenic soils. Thus, the microbial community is the most sensitive indicator of anthropogenic soil amendments and can serve to assess the success of soil self-restoration after human intervention. |
format |
Article in Journal/Newspaper |
author |
Evgeny Abakumov Aleksei Zverev Evgeny Andronov Timur Nizamutdinov |
author_facet |
Evgeny Abakumov Aleksei Zverev Evgeny Andronov Timur Nizamutdinov |
author_sort |
Evgeny Abakumov |
title |
Microbial Composition of Natural, Agricultural, and Technogenic Soils of Both Forest and Forest-Tundra of the Russian North |
title_short |
Microbial Composition of Natural, Agricultural, and Technogenic Soils of Both Forest and Forest-Tundra of the Russian North |
title_full |
Microbial Composition of Natural, Agricultural, and Technogenic Soils of Both Forest and Forest-Tundra of the Russian North |
title_fullStr |
Microbial Composition of Natural, Agricultural, and Technogenic Soils of Both Forest and Forest-Tundra of the Russian North |
title_full_unstemmed |
Microbial Composition of Natural, Agricultural, and Technogenic Soils of Both Forest and Forest-Tundra of the Russian North |
title_sort |
microbial composition of natural, agricultural, and technogenic soils of both forest and forest-tundra of the russian north |
publisher |
MDPI AG |
publishDate |
2023 |
url |
https://doi.org/10.3390/app13158981 https://doaj.org/article/c17f632f0f59429593b039fdac24fb2f |
long_lat |
ENVELOPE(72.517,72.517,65.533,65.533) ENVELOPE(66.602,66.602,66.530,66.530) |
geographic |
Nadym Salekhard |
geographic_facet |
Nadym Salekhard |
genre |
Russian North taiga Tundra |
genre_facet |
Russian North taiga Tundra |
op_source |
Applied Sciences, Vol 13, Iss 8981, p 8981 (2023) |
op_relation |
https://www.mdpi.com/2076-3417/13/15/8981 https://doaj.org/toc/2076-3417 doi:10.3390/app13158981 2076-3417 https://doaj.org/article/c17f632f0f59429593b039fdac24fb2f |
op_doi |
https://doi.org/10.3390/app13158981 |
container_title |
Applied Sciences |
container_volume |
13 |
container_issue |
15 |
container_start_page |
8981 |
_version_ |
1776203402610475008 |