Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms
The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ic...
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ftdoajarticles:oai:doaj.org/article:bebe16e1efa548eb8c62999a9ab797da 2023-10-01T03:52:59+02:00 Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms Taylor Priest Luis H. Orellana Bruno Huettel Bernhard M. Fuchs Rudolf Amann 2021-06-01T00:00:00Z https://doi.org/10.7717/peerj.11721 https://doaj.org/article/bebe16e1efa548eb8c62999a9ab797da EN eng PeerJ Inc. https://peerj.com/articles/11721.pdf https://peerj.com/articles/11721/ https://doaj.org/toc/2167-8359 doi:10.7717/peerj.11721 2167-8359 https://doaj.org/article/bebe16e1efa548eb8c62999a9ab797da PeerJ, Vol 9, p e11721 (2021) Arctic Microbiology Metagenomics Metagenome-assembled genomes Microbial ecology Medicine R article 2021 ftdoajarticles https://doi.org/10.7717/peerj.11721 2023-09-03T00:42:56Z The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ice decline, weakened water column stability and supported the northward shift of temperate species. The only deep-water gateway connecting the Arctic and North Atlantic and thus, fundamental for these exchange processes is the Fram Strait. Previous research in this region is extensive, however, data on the ecology of microbial communities is limited, reflecting the wider bias towards temperate and tropical latitudes. Therefore, we present 14 metagenomes, 11 short-read from Illumina and three long-read from PacBio Sequel II, of the 0.2–3 µm fraction to help alleviate such biases and support future analyses on changing ecological patterns. Additionally, we provide 136 species-representative, manually refined metagenome-assembled genomes which can be used for comparative genomics analyses and addressing questions regarding functionality or distribution of taxa. Article in Journal/Newspaper Arctic Arctic Ocean Climate change Fram Strait North Atlantic Sea ice Directory of Open Access Journals: DOAJ Articles Arctic Arctic Ocean PeerJ 9 e11721 |
institution |
Open Polar |
collection |
Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
Arctic Microbiology Metagenomics Metagenome-assembled genomes Microbial ecology Medicine R |
spellingShingle |
Arctic Microbiology Metagenomics Metagenome-assembled genomes Microbial ecology Medicine R Taylor Priest Luis H. Orellana Bruno Huettel Bernhard M. Fuchs Rudolf Amann Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
topic_facet |
Arctic Microbiology Metagenomics Metagenome-assembled genomes Microbial ecology Medicine R |
description |
The impacts of climate change on the Arctic Ocean are manifesting throughout the ecosystem at an unprecedented rate. Of global importance are the impacts on heat and freshwater exchange between the Arctic and North Atlantic Oceans. An expanding Atlantic influence in the Arctic has accelerated sea-ice decline, weakened water column stability and supported the northward shift of temperate species. The only deep-water gateway connecting the Arctic and North Atlantic and thus, fundamental for these exchange processes is the Fram Strait. Previous research in this region is extensive, however, data on the ecology of microbial communities is limited, reflecting the wider bias towards temperate and tropical latitudes. Therefore, we present 14 metagenomes, 11 short-read from Illumina and three long-read from PacBio Sequel II, of the 0.2–3 µm fraction to help alleviate such biases and support future analyses on changing ecological patterns. Additionally, we provide 136 species-representative, manually refined metagenome-assembled genomes which can be used for comparative genomics analyses and addressing questions regarding functionality or distribution of taxa. |
format |
Article in Journal/Newspaper |
author |
Taylor Priest Luis H. Orellana Bruno Huettel Bernhard M. Fuchs Rudolf Amann |
author_facet |
Taylor Priest Luis H. Orellana Bruno Huettel Bernhard M. Fuchs Rudolf Amann |
author_sort |
Taylor Priest |
title |
Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title_short |
Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title_full |
Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title_fullStr |
Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title_full_unstemmed |
Microbial metagenome-assembled genomes of the Fram Strait from short and long read sequencing platforms |
title_sort |
microbial metagenome-assembled genomes of the fram strait from short and long read sequencing platforms |
publisher |
PeerJ Inc. |
publishDate |
2021 |
url |
https://doi.org/10.7717/peerj.11721 https://doaj.org/article/bebe16e1efa548eb8c62999a9ab797da |
geographic |
Arctic Arctic Ocean |
geographic_facet |
Arctic Arctic Ocean |
genre |
Arctic Arctic Ocean Climate change Fram Strait North Atlantic Sea ice |
genre_facet |
Arctic Arctic Ocean Climate change Fram Strait North Atlantic Sea ice |
op_source |
PeerJ, Vol 9, p e11721 (2021) |
op_relation |
https://peerj.com/articles/11721.pdf https://peerj.com/articles/11721/ https://doaj.org/toc/2167-8359 doi:10.7717/peerj.11721 2167-8359 https://doaj.org/article/bebe16e1efa548eb8c62999a9ab797da |
op_doi |
https://doi.org/10.7717/peerj.11721 |
container_title |
PeerJ |
container_volume |
9 |
container_start_page |
e11721 |
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1778519254961750016 |