Species identification and connectivity of marine amphipods in Canada's three oceans.

Monitoring the distribution of marine biodiversity is a crucial step to better assess the impacts of global changes. Arctic marine fauna is dominated by amphipods in terms of abundance and biomass. These peracarids are an important marine order of crustaceans but the number of species found in the d...

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Published in:PLOS ONE
Main Authors: Astrid Tempestini, Søren Rysgaard, France Dufresne
Format: Article in Journal/Newspaper
Language:English
Published: Public Library of Science (PLoS) 2018
Subjects:
R
Q
Online Access:https://doi.org/10.1371/journal.pone.0197174
https://doaj.org/article/ba5ddeda10a94fe5bf4706d11d6fee18
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spelling ftdoajarticles:oai:doaj.org/article:ba5ddeda10a94fe5bf4706d11d6fee18 2023-05-15T14:28:53+02:00 Species identification and connectivity of marine amphipods in Canada's three oceans. Astrid Tempestini Søren Rysgaard France Dufresne 2018-01-01T00:00:00Z https://doi.org/10.1371/journal.pone.0197174 https://doaj.org/article/ba5ddeda10a94fe5bf4706d11d6fee18 EN eng Public Library of Science (PLoS) http://europepmc.org/articles/PMC5965885?pdf=render https://doaj.org/toc/1932-6203 1932-6203 doi:10.1371/journal.pone.0197174 https://doaj.org/article/ba5ddeda10a94fe5bf4706d11d6fee18 PLoS ONE, Vol 13, Iss 5, p e0197174 (2018) Medicine R Science Q article 2018 ftdoajarticles https://doi.org/10.1371/journal.pone.0197174 2022-12-31T06:00:32Z Monitoring the distribution of marine biodiversity is a crucial step to better assess the impacts of global changes. Arctic marine fauna is dominated by amphipods in terms of abundance and biomass. These peracarids are an important marine order of crustaceans but the number of species found in the different Canadian oceans is currently unknown. Furthermore, most species are difficult to identify due to poor taxonomic descriptions and morphological convergence. The aim of this study was to assess the species diversity of marine amphipods in the three Canadian oceans using DNA barcoding. To do so, we produced a database of DNA barcodes of amphipods from the three Canadian Oceans publicly available from the BOLD website to which we added 310 new sequences from the Canadian Arctic Archipelago. We first delimited amphipod species based on barcode gap detection techniques and tree based method (bPTP) and then compared the composition of amphipods among the three oceans in order to assess the influence of past transarctic exchanges on Arctic diversity. Our analysis of 2309 sequences which represent more than 250 provisional species revealed a high connectivity between the Atlantic and Arctic Oceans. Our results also suggest that a single threshold to delimitate species is not suitable for amphipods. This study highlights the challenges involved in species delimitation and the need to obtain complete barcoding inventories in marine invertebrates. Article in Journal/Newspaper Arctic Archipelago Arctic Canadian Arctic Archipelago Directory of Open Access Journals: DOAJ Articles Arctic Canadian Arctic Archipelago PLOS ONE 13 5 e0197174
institution Open Polar
collection Directory of Open Access Journals: DOAJ Articles
op_collection_id ftdoajarticles
language English
topic Medicine
R
Science
Q
spellingShingle Medicine
R
Science
Q
Astrid Tempestini
Søren Rysgaard
France Dufresne
Species identification and connectivity of marine amphipods in Canada's three oceans.
topic_facet Medicine
R
Science
Q
description Monitoring the distribution of marine biodiversity is a crucial step to better assess the impacts of global changes. Arctic marine fauna is dominated by amphipods in terms of abundance and biomass. These peracarids are an important marine order of crustaceans but the number of species found in the different Canadian oceans is currently unknown. Furthermore, most species are difficult to identify due to poor taxonomic descriptions and morphological convergence. The aim of this study was to assess the species diversity of marine amphipods in the three Canadian oceans using DNA barcoding. To do so, we produced a database of DNA barcodes of amphipods from the three Canadian Oceans publicly available from the BOLD website to which we added 310 new sequences from the Canadian Arctic Archipelago. We first delimited amphipod species based on barcode gap detection techniques and tree based method (bPTP) and then compared the composition of amphipods among the three oceans in order to assess the influence of past transarctic exchanges on Arctic diversity. Our analysis of 2309 sequences which represent more than 250 provisional species revealed a high connectivity between the Atlantic and Arctic Oceans. Our results also suggest that a single threshold to delimitate species is not suitable for amphipods. This study highlights the challenges involved in species delimitation and the need to obtain complete barcoding inventories in marine invertebrates.
format Article in Journal/Newspaper
author Astrid Tempestini
Søren Rysgaard
France Dufresne
author_facet Astrid Tempestini
Søren Rysgaard
France Dufresne
author_sort Astrid Tempestini
title Species identification and connectivity of marine amphipods in Canada's three oceans.
title_short Species identification and connectivity of marine amphipods in Canada's three oceans.
title_full Species identification and connectivity of marine amphipods in Canada's three oceans.
title_fullStr Species identification and connectivity of marine amphipods in Canada's three oceans.
title_full_unstemmed Species identification and connectivity of marine amphipods in Canada's three oceans.
title_sort species identification and connectivity of marine amphipods in canada's three oceans.
publisher Public Library of Science (PLoS)
publishDate 2018
url https://doi.org/10.1371/journal.pone.0197174
https://doaj.org/article/ba5ddeda10a94fe5bf4706d11d6fee18
geographic Arctic
Canadian Arctic Archipelago
geographic_facet Arctic
Canadian Arctic Archipelago
genre Arctic Archipelago
Arctic
Canadian Arctic Archipelago
genre_facet Arctic Archipelago
Arctic
Canadian Arctic Archipelago
op_source PLoS ONE, Vol 13, Iss 5, p e0197174 (2018)
op_relation http://europepmc.org/articles/PMC5965885?pdf=render
https://doaj.org/toc/1932-6203
1932-6203
doi:10.1371/journal.pone.0197174
https://doaj.org/article/ba5ddeda10a94fe5bf4706d11d6fee18
op_doi https://doi.org/10.1371/journal.pone.0197174
container_title PLOS ONE
container_volume 13
container_issue 5
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