Geography, seasonality, and host‐associated population structure influence the fecal microbiome of a genetically depauparate Arctic mammal

• Published in: Ecology and Evolution
• Main Authors: Samantha Bird, Erin Prewer, Susan Kutz, Lisa‐Marie Leclerc, Sibelle T. Vilaça, Christopher J. Kyle
• Format: Article in Journal/Newspaper
• Language: English
• Published: Wiley 2019
• Subjects: 16S rRNA; Canadian Arctic; fecal microbiome; muskox; Ovibos moschatus; population structure; Ecology; QH540-549.5; Arctic; Nunavut; Northwest Territories; ovibos moschatus; Victoria Island
• Online Access: https://doi.org/10.1002/ece3.5768; https://doaj.org/article/b8c05a2d7b704668aac9d0e0d7931864

Abstract The Canadian Arctic is an extreme environment with low floral and faunal diversity characterized by major seasonal shifts in temperature, moisture, and daylight. Muskoxen (Ovibos moschatus) are one of few large herbivores able to survive this harsh environment. Microbiome research of the gastrointestinal tract may hold clues as to how muskoxen exist in the Arctic, but also how this species may respond to rapid environmental changes. In this study, we investigated the effects of season (spring/summer/winter), year (2007–2016), and host genetic structure on population‐level microbiome variation in muskoxen from the Canadian Arctic. We utilized 16S rRNA gene sequencing to characterize the fecal microbial communities of 78 male muskoxen encompassing two population genetic clusters. These clusters are defined by Arctic Mainland and Island populations, including the following: (a) two mainland sampling locations of the Northwest Territories and Nunavut and (b) four locations of Victoria Island. Between these geographic populations, we found that differences in the microbiome reflected host‐associated genetic cluster with evidence of migration. Within populations, seasonality influenced bacterial diversity with no significant differences between years of sampling. We found evidence of pathogenic bacteria, with significantly higher presence in mainland samples. Our findings demonstrate the effects of seasonality and the role of host population‐level structure in driving fecal microbiome differences in a large Arctic mammal.