First Expansion of the Public Tomato Brown Rugose Fruit Virus (ToBRFV) Nextstrain Build; Inclusion of New Genomic and Epidemiological Data
Tomato brown rugose fruit virus (ToBRFV) is a tobamovirus that was first detected in Israel and Jordan following an outbreak of a new disease infecting tomato in 2014. Since then, the virus has been reported from all continents except Oceania and Antarctica. In response to the first finding of the v...
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American Phytopathological Society
2021
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ftdoajarticles:oai:doaj.org/article:af28a96bb9d44433908b35f94c815bea 2023-11-05T03:36:20+01:00 First Expansion of the Public Tomato Brown Rugose Fruit Virus (ToBRFV) Nextstrain Build; Inclusion of New Genomic and Epidemiological Data Bart T. L. H. van de Vossenberg Thikra Dawood Marek Woźny Marleen Botermans 2021-12-01T00:00:00Z https://doi.org/10.1094/PHYTOFR-01-21-0005-A https://doaj.org/article/af28a96bb9d44433908b35f94c815bea EN eng American Phytopathological Society https://apsjournals.apsnet.org/doi/10.1094/PHYTOFR-01-21-0005-A https://doaj.org/toc/2690-5442 doi:10.1094/PHYTOFR-01-21-0005-A 2690-5442 https://doaj.org/article/af28a96bb9d44433908b35f94c815bea PhytoFrontiers, Vol 1, Iss 4, Pp 359-363 (2021) data sharing epidemiology genomics track and trace virology Plant culture SB1-1110 Botany QK1-989 article 2021 ftdoajarticles https://doi.org/10.1094/PHYTOFR-01-21-0005-A 2023-10-08T00:38:45Z Tomato brown rugose fruit virus (ToBRFV) is a tobamovirus that was first detected in Israel and Jordan following an outbreak of a new disease infecting tomato in 2014. Since then, the virus has been reported from all continents except Oceania and Antarctica. In response to the first finding of the virus in The Netherlands, the Dutch National Plant Protection Organization created a ToBRFV Nextstrain build (v1). In this report, we announce 47 new (near) complete ToBRFV genomes and the generation of the new ToBRFV Nextstrain (v2) build containing 118 ToBRFV genomes with associated geographic and epidemiological data. Examples of utilization of the genomic sequences are presented, and we report the first sequence from South America and present a novel hypothesis on the possible ToBRFV center of origin.[Graphic: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license. Article in Journal/Newspaper Antarc* Antarctica Directory of Open Access Journals: DOAJ Articles PhytoFrontiers™ 1 4 359 363 |
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Directory of Open Access Journals: DOAJ Articles |
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English |
topic |
data sharing epidemiology genomics track and trace virology Plant culture SB1-1110 Botany QK1-989 |
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data sharing epidemiology genomics track and trace virology Plant culture SB1-1110 Botany QK1-989 Bart T. L. H. van de Vossenberg Thikra Dawood Marek Woźny Marleen Botermans First Expansion of the Public Tomato Brown Rugose Fruit Virus (ToBRFV) Nextstrain Build; Inclusion of New Genomic and Epidemiological Data |
topic_facet |
data sharing epidemiology genomics track and trace virology Plant culture SB1-1110 Botany QK1-989 |
description |
Tomato brown rugose fruit virus (ToBRFV) is a tobamovirus that was first detected in Israel and Jordan following an outbreak of a new disease infecting tomato in 2014. Since then, the virus has been reported from all continents except Oceania and Antarctica. In response to the first finding of the virus in The Netherlands, the Dutch National Plant Protection Organization created a ToBRFV Nextstrain build (v1). In this report, we announce 47 new (near) complete ToBRFV genomes and the generation of the new ToBRFV Nextstrain (v2) build containing 118 ToBRFV genomes with associated geographic and epidemiological data. Examples of utilization of the genomic sequences are presented, and we report the first sequence from South America and present a novel hypothesis on the possible ToBRFV center of origin.[Graphic: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license. |
format |
Article in Journal/Newspaper |
author |
Bart T. L. H. van de Vossenberg Thikra Dawood Marek Woźny Marleen Botermans |
author_facet |
Bart T. L. H. van de Vossenberg Thikra Dawood Marek Woźny Marleen Botermans |
author_sort |
Bart T. L. H. van de Vossenberg |
title |
First Expansion of the Public Tomato Brown Rugose Fruit Virus (ToBRFV) Nextstrain Build; Inclusion of New Genomic and Epidemiological Data |
title_short |
First Expansion of the Public Tomato Brown Rugose Fruit Virus (ToBRFV) Nextstrain Build; Inclusion of New Genomic and Epidemiological Data |
title_full |
First Expansion of the Public Tomato Brown Rugose Fruit Virus (ToBRFV) Nextstrain Build; Inclusion of New Genomic and Epidemiological Data |
title_fullStr |
First Expansion of the Public Tomato Brown Rugose Fruit Virus (ToBRFV) Nextstrain Build; Inclusion of New Genomic and Epidemiological Data |
title_full_unstemmed |
First Expansion of the Public Tomato Brown Rugose Fruit Virus (ToBRFV) Nextstrain Build; Inclusion of New Genomic and Epidemiological Data |
title_sort |
first expansion of the public tomato brown rugose fruit virus (tobrfv) nextstrain build; inclusion of new genomic and epidemiological data |
publisher |
American Phytopathological Society |
publishDate |
2021 |
url |
https://doi.org/10.1094/PHYTOFR-01-21-0005-A https://doaj.org/article/af28a96bb9d44433908b35f94c815bea |
genre |
Antarc* Antarctica |
genre_facet |
Antarc* Antarctica |
op_source |
PhytoFrontiers, Vol 1, Iss 4, Pp 359-363 (2021) |
op_relation |
https://apsjournals.apsnet.org/doi/10.1094/PHYTOFR-01-21-0005-A https://doaj.org/toc/2690-5442 doi:10.1094/PHYTOFR-01-21-0005-A 2690-5442 https://doaj.org/article/af28a96bb9d44433908b35f94c815bea |
op_doi |
https://doi.org/10.1094/PHYTOFR-01-21-0005-A |
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PhytoFrontiers™ |
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1 |
container_issue |
4 |
container_start_page |
359 |
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363 |
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