High-Quality Complete Genome Resource of Pathogenic Bacterium Pectobacterium atrosepticum Strain Green1 Isolated from Potato (Solanum tuberosum L.) in Greenland
Pectobacterium atrosepticum is a narrow-host-range, pectinolytic, plant-pathogenic bacterium causing blackleg of potato (Solanum tuberosum L.) worldwide. Till present, several P. atrosepticum genomes have been sequenced and characterized in detail; however, all of these genomes have come from P. atr...
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The American Phytopathological Society
2021
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ftdoajarticles:oai:doaj.org/article:a8253062ccce4780b4ee23213cee8678 2023-05-15T16:28:08+02:00 High-Quality Complete Genome Resource of Pathogenic Bacterium Pectobacterium atrosepticum Strain Green1 Isolated from Potato (Solanum tuberosum L.) in Greenland Robert Czajkowski Lukasz Rabalski Maciej Kosinski Eigil de Neergaard Susanne Harding 2021-11-01T00:00:00Z https://doi.org/10.1094/MPMI-06-21-0130-A https://doaj.org/article/a8253062ccce4780b4ee23213cee8678 EN eng The American Phytopathological Society https://apsjournals.apsnet.org/doi/10.1094/MPMI-06-21-0130-A https://doaj.org/toc/0894-0282 https://doaj.org/toc/1943-7706 doi:10.1094/MPMI-06-21-0130-A 1943-7706 0894-0282 https://doaj.org/article/a8253062ccce4780b4ee23213cee8678 Molecular Plant-Microbe Interactions, Vol 34, Iss 11, Pp 1328-1333 (2021) adaptation blackleg Erwinia carotovora subsp. atroseptica genomics microbial ecology population biology Microbiology QR1-502 Botany QK1-989 article 2021 ftdoajarticles https://doi.org/10.1094/MPMI-06-21-0130-A 2022-12-31T12:30:28Z Pectobacterium atrosepticum is a narrow-host-range, pectinolytic, plant-pathogenic bacterium causing blackleg of potato (Solanum tuberosum L.) worldwide. Till present, several P. atrosepticum genomes have been sequenced and characterized in detail; however, all of these genomes have come from P. atrosepticum isolates from plants grown in temperate zones, not from hosts cultivated under different climatic conditions. Herewith, we present the first complete, high-quality genome of the P. atrosepticum strain Green1 isolated from potato plants grown under a subarctic climate in Greenland. The genome of P. atrosepticum strain Green1 consists of one chromosome of 4,959,719 bp, with a GC content of 51% and no plasmids. The genome contains 4,531 annotated features, including 4,179 protein-coding genes, 22 ribosomal RNA genes, 70 transfer RNA genes, 8 noncoding RNA genes, 2 CRISPRs, and 126 pseudogenes. We believe that the information in this first high-quality, complete, closed genome of P. atrosepticum strains isolated from host plants grown in a subarctic agricultural region will provide resources for comparative genomic studies and for analyses targeting climatic adaptation and ecological fitness mechanisms present in P. atrosepticum.[Graphic: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license. Article in Journal/Newspaper Greenland Subarctic Directory of Open Access Journals: DOAJ Articles Greenland Molecular Plant-Microbe Interactions® 34 11 1328 1333 |
institution |
Open Polar |
collection |
Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
adaptation blackleg Erwinia carotovora subsp. atroseptica genomics microbial ecology population biology Microbiology QR1-502 Botany QK1-989 |
spellingShingle |
adaptation blackleg Erwinia carotovora subsp. atroseptica genomics microbial ecology population biology Microbiology QR1-502 Botany QK1-989 Robert Czajkowski Lukasz Rabalski Maciej Kosinski Eigil de Neergaard Susanne Harding High-Quality Complete Genome Resource of Pathogenic Bacterium Pectobacterium atrosepticum Strain Green1 Isolated from Potato (Solanum tuberosum L.) in Greenland |
topic_facet |
adaptation blackleg Erwinia carotovora subsp. atroseptica genomics microbial ecology population biology Microbiology QR1-502 Botany QK1-989 |
description |
Pectobacterium atrosepticum is a narrow-host-range, pectinolytic, plant-pathogenic bacterium causing blackleg of potato (Solanum tuberosum L.) worldwide. Till present, several P. atrosepticum genomes have been sequenced and characterized in detail; however, all of these genomes have come from P. atrosepticum isolates from plants grown in temperate zones, not from hosts cultivated under different climatic conditions. Herewith, we present the first complete, high-quality genome of the P. atrosepticum strain Green1 isolated from potato plants grown under a subarctic climate in Greenland. The genome of P. atrosepticum strain Green1 consists of one chromosome of 4,959,719 bp, with a GC content of 51% and no plasmids. The genome contains 4,531 annotated features, including 4,179 protein-coding genes, 22 ribosomal RNA genes, 70 transfer RNA genes, 8 noncoding RNA genes, 2 CRISPRs, and 126 pseudogenes. We believe that the information in this first high-quality, complete, closed genome of P. atrosepticum strains isolated from host plants grown in a subarctic agricultural region will provide resources for comparative genomic studies and for analyses targeting climatic adaptation and ecological fitness mechanisms present in P. atrosepticum.[Graphic: see text] Copyright © 2021 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license. |
format |
Article in Journal/Newspaper |
author |
Robert Czajkowski Lukasz Rabalski Maciej Kosinski Eigil de Neergaard Susanne Harding |
author_facet |
Robert Czajkowski Lukasz Rabalski Maciej Kosinski Eigil de Neergaard Susanne Harding |
author_sort |
Robert Czajkowski |
title |
High-Quality Complete Genome Resource of Pathogenic Bacterium Pectobacterium atrosepticum Strain Green1 Isolated from Potato (Solanum tuberosum L.) in Greenland |
title_short |
High-Quality Complete Genome Resource of Pathogenic Bacterium Pectobacterium atrosepticum Strain Green1 Isolated from Potato (Solanum tuberosum L.) in Greenland |
title_full |
High-Quality Complete Genome Resource of Pathogenic Bacterium Pectobacterium atrosepticum Strain Green1 Isolated from Potato (Solanum tuberosum L.) in Greenland |
title_fullStr |
High-Quality Complete Genome Resource of Pathogenic Bacterium Pectobacterium atrosepticum Strain Green1 Isolated from Potato (Solanum tuberosum L.) in Greenland |
title_full_unstemmed |
High-Quality Complete Genome Resource of Pathogenic Bacterium Pectobacterium atrosepticum Strain Green1 Isolated from Potato (Solanum tuberosum L.) in Greenland |
title_sort |
high-quality complete genome resource of pathogenic bacterium pectobacterium atrosepticum strain green1 isolated from potato (solanum tuberosum l.) in greenland |
publisher |
The American Phytopathological Society |
publishDate |
2021 |
url |
https://doi.org/10.1094/MPMI-06-21-0130-A https://doaj.org/article/a8253062ccce4780b4ee23213cee8678 |
geographic |
Greenland |
geographic_facet |
Greenland |
genre |
Greenland Subarctic |
genre_facet |
Greenland Subarctic |
op_source |
Molecular Plant-Microbe Interactions, Vol 34, Iss 11, Pp 1328-1333 (2021) |
op_relation |
https://apsjournals.apsnet.org/doi/10.1094/MPMI-06-21-0130-A https://doaj.org/toc/0894-0282 https://doaj.org/toc/1943-7706 doi:10.1094/MPMI-06-21-0130-A 1943-7706 0894-0282 https://doaj.org/article/a8253062ccce4780b4ee23213cee8678 |
op_doi |
https://doi.org/10.1094/MPMI-06-21-0130-A |
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Molecular Plant-Microbe Interactions® |
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34 |
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11 |
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1328 |
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