Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae)
The phylogeographical analysis and ecological niche modeling (ENM) of the widely distributed Northern Hemisphere Sibbaldia procumbens s.l. can help evaluate how tectonic motion and climate change helped shape the current distribution patterns of this species. Three chloroplast regions (the atpI-atpH...
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ftdoajarticles:oai:doaj.org/article:a16d21b088ef446b9915a96cf4994c7b 2023-05-15T18:19:25+02:00 Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae) Hua-Jie Zhang Tao Feng Jacob B. Landis Tao Deng Xu Zhang Ai-Ping Meng Hang Sun Heng-Chang Wang Yan-Xia Sun 2019-03-01T00:00:00Z https://doi.org/10.3389/fgene.2019.00201 https://doaj.org/article/a16d21b088ef446b9915a96cf4994c7b EN eng Frontiers Media S.A. https://www.frontiersin.org/article/10.3389/fgene.2019.00201/full https://doaj.org/toc/1664-8021 1664-8021 doi:10.3389/fgene.2019.00201 https://doaj.org/article/a16d21b088ef446b9915a96cf4994c7b Frontiers in Genetics, Vol 10 (2019) Sibbaldia procumbens s.l chloroplast regions phylogeography ecological niche modeling Qinghai-Tibet Plateau Genetics QH426-470 article 2019 ftdoajarticles https://doi.org/10.3389/fgene.2019.00201 2022-12-31T03:11:59Z The phylogeographical analysis and ecological niche modeling (ENM) of the widely distributed Northern Hemisphere Sibbaldia procumbens s.l. can help evaluate how tectonic motion and climate change helped shape the current distribution patterns of this species. Three chloroplast regions (the atpI-atpH and trnL-trnF intergenic spacers and the trnL intron) were obtained from 332 (156 from present study and 176 from the previous study) individuals of S. procumbens s.l. An unrooted haplotype network was constructed using the software NETWORK, while BEAST was used to estimate the divergence times among haplotypes. ENM was performed by MAXENT to explore the historical dynamic distribution of S. procumbens s.l. The haplotype distribution demonstrates significant phylogeographical structure (NST > GST; P < 0.01). The best partitioning of genetic diversity by SAMOVA produced three groups, while the time to the most recent common ancestor of all haplotypes was estimated to originate during the Miocene, with most of the haplotype diversity having occurred during the Quaternary. The MAXENT analysis showed S. procumbens s.l. had a wider distribution range during the last glacial maximum and a narrower distribution range during the last interglacial, with predictions into the future showing the distribution range of S. procumbens s.l. shrinking. Article in Journal/Newspaper Sibbaldia procumbens Directory of Open Access Journals: DOAJ Articles Frontiers in Genetics 10 |
institution |
Open Polar |
collection |
Directory of Open Access Journals: DOAJ Articles |
op_collection_id |
ftdoajarticles |
language |
English |
topic |
Sibbaldia procumbens s.l chloroplast regions phylogeography ecological niche modeling Qinghai-Tibet Plateau Genetics QH426-470 |
spellingShingle |
Sibbaldia procumbens s.l chloroplast regions phylogeography ecological niche modeling Qinghai-Tibet Plateau Genetics QH426-470 Hua-Jie Zhang Tao Feng Jacob B. Landis Tao Deng Xu Zhang Ai-Ping Meng Hang Sun Heng-Chang Wang Yan-Xia Sun Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae) |
topic_facet |
Sibbaldia procumbens s.l chloroplast regions phylogeography ecological niche modeling Qinghai-Tibet Plateau Genetics QH426-470 |
description |
The phylogeographical analysis and ecological niche modeling (ENM) of the widely distributed Northern Hemisphere Sibbaldia procumbens s.l. can help evaluate how tectonic motion and climate change helped shape the current distribution patterns of this species. Three chloroplast regions (the atpI-atpH and trnL-trnF intergenic spacers and the trnL intron) were obtained from 332 (156 from present study and 176 from the previous study) individuals of S. procumbens s.l. An unrooted haplotype network was constructed using the software NETWORK, while BEAST was used to estimate the divergence times among haplotypes. ENM was performed by MAXENT to explore the historical dynamic distribution of S. procumbens s.l. The haplotype distribution demonstrates significant phylogeographical structure (NST > GST; P < 0.01). The best partitioning of genetic diversity by SAMOVA produced three groups, while the time to the most recent common ancestor of all haplotypes was estimated to originate during the Miocene, with most of the haplotype diversity having occurred during the Quaternary. The MAXENT analysis showed S. procumbens s.l. had a wider distribution range during the last glacial maximum and a narrower distribution range during the last interglacial, with predictions into the future showing the distribution range of S. procumbens s.l. shrinking. |
format |
Article in Journal/Newspaper |
author |
Hua-Jie Zhang Tao Feng Jacob B. Landis Tao Deng Xu Zhang Ai-Ping Meng Hang Sun Heng-Chang Wang Yan-Xia Sun |
author_facet |
Hua-Jie Zhang Tao Feng Jacob B. Landis Tao Deng Xu Zhang Ai-Ping Meng Hang Sun Heng-Chang Wang Yan-Xia Sun |
author_sort |
Hua-Jie Zhang |
title |
Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae) |
title_short |
Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae) |
title_full |
Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae) |
title_fullStr |
Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae) |
title_full_unstemmed |
Molecular Phylogeography and Ecological Niche Modeling of Sibbaldia procumbens s.l. (Rosaceae) |
title_sort |
molecular phylogeography and ecological niche modeling of sibbaldia procumbens s.l. (rosaceae) |
publisher |
Frontiers Media S.A. |
publishDate |
2019 |
url |
https://doi.org/10.3389/fgene.2019.00201 https://doaj.org/article/a16d21b088ef446b9915a96cf4994c7b |
genre |
Sibbaldia procumbens |
genre_facet |
Sibbaldia procumbens |
op_source |
Frontiers in Genetics, Vol 10 (2019) |
op_relation |
https://www.frontiersin.org/article/10.3389/fgene.2019.00201/full https://doaj.org/toc/1664-8021 1664-8021 doi:10.3389/fgene.2019.00201 https://doaj.org/article/a16d21b088ef446b9915a96cf4994c7b |
op_doi |
https://doi.org/10.3389/fgene.2019.00201 |
container_title |
Frontiers in Genetics |
container_volume |
10 |
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1766196495935078400 |