The complete mitochondrial genome of the pink sea fan, Eunicella verrucosa (Pallas, 1766)
The pink sea fan, Eunicella verrucosa (Pallas, 1766), inhabits rocky substrates across the northeast Atlantic and the western Mediterranean. Across much of its range it has been detrimentally affected by fishing. DNA from 17 E. verrucosa specimens was amplified by phi29-induced rolling circle amplif...
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2021
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ftdoajarticles:oai:doaj.org/article:9c8cb50d7b2a4a5ba89d00ad36a05712 2023-12-03T10:27:40+01:00 The complete mitochondrial genome of the pink sea fan, Eunicella verrucosa (Pallas, 1766) Luke Hooper Tom L. Jenkins Andrew M. Griffiths Karen A. Moore Jamie R. Stevens 2021-11-01T00:00:00Z https://doi.org/10.1080/23802359.2021.1994899 https://doaj.org/article/9c8cb50d7b2a4a5ba89d00ad36a05712 EN eng Taylor & Francis Group http://dx.doi.org/10.1080/23802359.2021.1994899 https://doaj.org/toc/2380-2359 2380-2359 doi:10.1080/23802359.2021.1994899 https://doaj.org/article/9c8cb50d7b2a4a5ba89d00ad36a05712 Mitochondrial DNA. Part B. Resources, Vol 6, Iss 11, Pp 3309-3311 (2021) sea fan gorgonian dna mismatch repair gene alcyoncea Genetics QH426-470 article 2021 ftdoajarticles https://doi.org/10.1080/23802359.2021.1994899 2023-11-05T01:36:20Z The pink sea fan, Eunicella verrucosa (Pallas, 1766), inhabits rocky substrates across the northeast Atlantic and the western Mediterranean. Across much of its range it has been detrimentally affected by fishing. DNA from 17 E. verrucosa specimens was amplified by phi29-induced rolling circle amplification. Following purification by sodium acetate-ethanol precipitation, the circular genomic DNA was sequenced on an Illumina MiSeq v2. Specimens originated from sites along the west coast of Ireland, southwest Wales, southwest/southern England, northwest France, southern Portugal, and the Mediterranean coast of northeast Spain. All samples had identical mitochondrial genome sequences of 19,267 bp and included 14 protein-coding genes (including the mutS gene), two ribosomal RNA subunits (12S and 16S) and one methionine tRNA gene. Two genes (nad2 and nad5) overlapped by 13 bp; all other genes were separated by non-coding intergenic regions. All protein-coding genes had the same start codon (ATG) and a TAA or TAG stop codon, except for cox1 that terminated with the incomplete stop codon T--. The mitochondrial genome of E. verrucosa (MW588805) showed 99.72% similarity with that of a related sea fan species, Eunicella cavolini, with six SNPs and a 49 bp deletion between nad5 and nad4 in E. verrucosa distinguishing the two. Article in Journal/Newspaper Northeast Atlantic Directory of Open Access Journals: DOAJ Articles Mitochondrial DNA Part B 6 11 3309 3311 |
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Directory of Open Access Journals: DOAJ Articles |
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English |
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sea fan gorgonian dna mismatch repair gene alcyoncea Genetics QH426-470 |
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sea fan gorgonian dna mismatch repair gene alcyoncea Genetics QH426-470 Luke Hooper Tom L. Jenkins Andrew M. Griffiths Karen A. Moore Jamie R. Stevens The complete mitochondrial genome of the pink sea fan, Eunicella verrucosa (Pallas, 1766) |
topic_facet |
sea fan gorgonian dna mismatch repair gene alcyoncea Genetics QH426-470 |
description |
The pink sea fan, Eunicella verrucosa (Pallas, 1766), inhabits rocky substrates across the northeast Atlantic and the western Mediterranean. Across much of its range it has been detrimentally affected by fishing. DNA from 17 E. verrucosa specimens was amplified by phi29-induced rolling circle amplification. Following purification by sodium acetate-ethanol precipitation, the circular genomic DNA was sequenced on an Illumina MiSeq v2. Specimens originated from sites along the west coast of Ireland, southwest Wales, southwest/southern England, northwest France, southern Portugal, and the Mediterranean coast of northeast Spain. All samples had identical mitochondrial genome sequences of 19,267 bp and included 14 protein-coding genes (including the mutS gene), two ribosomal RNA subunits (12S and 16S) and one methionine tRNA gene. Two genes (nad2 and nad5) overlapped by 13 bp; all other genes were separated by non-coding intergenic regions. All protein-coding genes had the same start codon (ATG) and a TAA or TAG stop codon, except for cox1 that terminated with the incomplete stop codon T--. The mitochondrial genome of E. verrucosa (MW588805) showed 99.72% similarity with that of a related sea fan species, Eunicella cavolini, with six SNPs and a 49 bp deletion between nad5 and nad4 in E. verrucosa distinguishing the two. |
format |
Article in Journal/Newspaper |
author |
Luke Hooper Tom L. Jenkins Andrew M. Griffiths Karen A. Moore Jamie R. Stevens |
author_facet |
Luke Hooper Tom L. Jenkins Andrew M. Griffiths Karen A. Moore Jamie R. Stevens |
author_sort |
Luke Hooper |
title |
The complete mitochondrial genome of the pink sea fan, Eunicella verrucosa (Pallas, 1766) |
title_short |
The complete mitochondrial genome of the pink sea fan, Eunicella verrucosa (Pallas, 1766) |
title_full |
The complete mitochondrial genome of the pink sea fan, Eunicella verrucosa (Pallas, 1766) |
title_fullStr |
The complete mitochondrial genome of the pink sea fan, Eunicella verrucosa (Pallas, 1766) |
title_full_unstemmed |
The complete mitochondrial genome of the pink sea fan, Eunicella verrucosa (Pallas, 1766) |
title_sort |
complete mitochondrial genome of the pink sea fan, eunicella verrucosa (pallas, 1766) |
publisher |
Taylor & Francis Group |
publishDate |
2021 |
url |
https://doi.org/10.1080/23802359.2021.1994899 https://doaj.org/article/9c8cb50d7b2a4a5ba89d00ad36a05712 |
genre |
Northeast Atlantic |
genre_facet |
Northeast Atlantic |
op_source |
Mitochondrial DNA. Part B. Resources, Vol 6, Iss 11, Pp 3309-3311 (2021) |
op_relation |
http://dx.doi.org/10.1080/23802359.2021.1994899 https://doaj.org/toc/2380-2359 2380-2359 doi:10.1080/23802359.2021.1994899 https://doaj.org/article/9c8cb50d7b2a4a5ba89d00ad36a05712 |
op_doi |
https://doi.org/10.1080/23802359.2021.1994899 |
container_title |
Mitochondrial DNA Part B |
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6 |
container_issue |
11 |
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3309 |
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3311 |
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1784277526715039744 |