Genetic and Structural Diversity of Prokaryotic Ice-Binding Proteins from the Central Arctic Ocean

Ice-binding proteins (IBPs) are a group of ecologically and biotechnologically relevant enzymes produced by psychrophilic organisms. Although putative IBPs containing the domain of unknown function (DUF) 3494 have been identified in many taxa of polar microbes, our knowledge of their genetic and str...

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Bibliographic Details
Published in:Genes
Main Authors: Johanna C. Winder, William Boulton, Asaf Salamov, Sarah Lena Eggers, Katja Metfies, Vincent Moulton, Thomas Mock
Format: Article in Journal/Newspaper
Language:English
Published: MDPI AG 2023
Subjects:
metagenomics
MAGs
ice-binding proteins
DUF3494
domain shuffling
polar genomics
Genetics
QH426-470
Arctic
Arctic Ocean
Sea ice
Online Access:https://doi.org/10.3390/genes14020363
https://doaj.org/article/863dc6104cbc492986d118d588e60fc8
Description
Summary:Ice-binding proteins (IBPs) are a group of ecologically and biotechnologically relevant enzymes produced by psychrophilic organisms. Although putative IBPs containing the domain of unknown function (DUF) 3494 have been identified in many taxa of polar microbes, our knowledge of their genetic and structural diversity in natural microbial communities is limited. Here, we used samples from sea ice and sea water collected in the central Arctic Ocean as part of the MOSAiC expedition for metagenome sequencing and the subsequent analyses of metagenome-assembled genomes (MAGs). By linking structurally diverse IBPs to particular environments and potential functions, we reveal that IBP sequences are enriched in interior ice, have diverse genomic contexts and cluster taxonomically. Their diverse protein structures may be a consequence of domain shuffling, leading to variable combinations of protein domains in IBPs and probably reflecting the functional versatility required to thrive in the extreme and variable environment of the central Arctic Ocean.

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