A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon ( Salmo salar L.)
Abstract Background Atlantic salmon ( Salmo salar L.) is an environmentally and economically important organism and its gene content is reasonably well characterized. From a transcriptional standpoint, it is important to characterize the changes in gene expression over the course of unperturbed earl...
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ftdoajarticles:oai:doaj.org/article:82a943d9b20047e48335101c3f5dba75 2023-05-15T15:30:36+02:00 A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon ( Salmo salar L.) Marass Francesco Yasuike Motoshige von Schalburg Kris R Sanderson Dan S Jantzen Stuart G Koop Ben F 2011-03-01T00:00:00Z https://doi.org/10.1186/1756-0500-4-88 https://doaj.org/article/82a943d9b20047e48335101c3f5dba75 EN eng BMC http://www.biomedcentral.com/1756-0500/4/88 https://doaj.org/toc/1756-0500 doi:10.1186/1756-0500-4-88 1756-0500 https://doaj.org/article/82a943d9b20047e48335101c3f5dba75 BMC Research Notes, Vol 4, Iss 1, p 88 (2011) Medicine R Biology (General) QH301-705.5 Science (General) Q1-390 article 2011 ftdoajarticles https://doi.org/10.1186/1756-0500-4-88 2022-12-31T08:46:26Z Abstract Background Atlantic salmon ( Salmo salar L.) is an environmentally and economically important organism and its gene content is reasonably well characterized. From a transcriptional standpoint, it is important to characterize the changes in gene expression over the course of unperturbed early development, from fertilization through to the parr stage. Findings S. salar samples were taken at 17 time points from 2 to 89 days post fertilization. Total RNA was extracted and cRNA was synthesized and hybridized to a newly developed 44K oligo salmonid microarray platform. Quantified results were subjected to preliminary data analysis and submitted to NCBI's Gene Expression Omnibus (GEO). Data can be found under the GEO accession number GSE25938. http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE25938 Conclusions Throughout the entire period of development, several thousand genes were found to be differentially regulated. This work represents the trancriptional characterization of a very large geneset that will be extremely valuable in further examination of the transcriptional changes in Atlantic salmon during the first few months of development. The expression profiles can help to annotate salmon genes in addition to being used as references against any number of experimental variables to which developing salmonids might be subjected. Article in Journal/Newspaper Atlantic salmon Salmo salar Directory of Open Access Journals: DOAJ Articles BMC Research Notes 4 1 |
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Directory of Open Access Journals: DOAJ Articles |
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Medicine R Biology (General) QH301-705.5 Science (General) Q1-390 |
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Medicine R Biology (General) QH301-705.5 Science (General) Q1-390 Marass Francesco Yasuike Motoshige von Schalburg Kris R Sanderson Dan S Jantzen Stuart G Koop Ben F A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon ( Salmo salar L.) |
topic_facet |
Medicine R Biology (General) QH301-705.5 Science (General) Q1-390 |
description |
Abstract Background Atlantic salmon ( Salmo salar L.) is an environmentally and economically important organism and its gene content is reasonably well characterized. From a transcriptional standpoint, it is important to characterize the changes in gene expression over the course of unperturbed early development, from fertilization through to the parr stage. Findings S. salar samples were taken at 17 time points from 2 to 89 days post fertilization. Total RNA was extracted and cRNA was synthesized and hybridized to a newly developed 44K oligo salmonid microarray platform. Quantified results were subjected to preliminary data analysis and submitted to NCBI's Gene Expression Omnibus (GEO). Data can be found under the GEO accession number GSE25938. http://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE25938 Conclusions Throughout the entire period of development, several thousand genes were found to be differentially regulated. This work represents the trancriptional characterization of a very large geneset that will be extremely valuable in further examination of the transcriptional changes in Atlantic salmon during the first few months of development. The expression profiles can help to annotate salmon genes in addition to being used as references against any number of experimental variables to which developing salmonids might be subjected. |
format |
Article in Journal/Newspaper |
author |
Marass Francesco Yasuike Motoshige von Schalburg Kris R Sanderson Dan S Jantzen Stuart G Koop Ben F |
author_facet |
Marass Francesco Yasuike Motoshige von Schalburg Kris R Sanderson Dan S Jantzen Stuart G Koop Ben F |
author_sort |
Marass Francesco |
title |
A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon ( Salmo salar L.) |
title_short |
A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon ( Salmo salar L.) |
title_full |
A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon ( Salmo salar L.) |
title_fullStr |
A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon ( Salmo salar L.) |
title_full_unstemmed |
A 44K microarray dataset of the changing transcriptome in developing Atlantic salmon ( Salmo salar L.) |
title_sort |
44k microarray dataset of the changing transcriptome in developing atlantic salmon ( salmo salar l.) |
publisher |
BMC |
publishDate |
2011 |
url |
https://doi.org/10.1186/1756-0500-4-88 https://doaj.org/article/82a943d9b20047e48335101c3f5dba75 |
genre |
Atlantic salmon Salmo salar |
genre_facet |
Atlantic salmon Salmo salar |
op_source |
BMC Research Notes, Vol 4, Iss 1, p 88 (2011) |
op_relation |
http://www.biomedcentral.com/1756-0500/4/88 https://doaj.org/toc/1756-0500 doi:10.1186/1756-0500-4-88 1756-0500 https://doaj.org/article/82a943d9b20047e48335101c3f5dba75 |
op_doi |
https://doi.org/10.1186/1756-0500-4-88 |
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BMC Research Notes |
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4 |
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1 |
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1766361053825859584 |